KEGG   Brassica oleracea (wild cabbage): 106342366
Entry
106342366         CDS       T04124                                 
Name
(RefSeq) THO complex subunit 5B
  KO
K13174  THO complex subunit 5
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    106342366
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106342366
   03041 Spliceosome [BR:boe03041]
    106342366
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106342366
Spliceosome [BR:boe03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106342366
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 106342366
NCBI-ProteinID: XP_013636733
UniProt: A0A0D3BUS0
Position
C4:18048931..18052473
AA seq 819 aa
MEDGEIEEGMVTADEYPTSEAAMETVATPREPVKSPLELLRESKTSVEEIVGRMLSIKKE
GNNKSEIRELLTQMFLNFVNLRQANRAILTEEDKVKAETERAKGPVDFTTLQLHNLMYEK
SHYVKAIKACRDFKSKYPDIDLVSEEAFFRDAPEDQSVATDTSRLLMPKRLNFELHQRKE
LCKHRARLEQKKKSLLETIAERKKFLSSLPLHLKSLKKASIPVQNQLGIQHTKKLKQHSL
AELLPPPLYVIYSQLLAQKEAFQERIDLELLGSLKDAQAYARQQSNKDSGMSSNNTENSR
LEDDGPDDDDDGQRRRKRPKKVTSKEGSDKAGLLYQVHPLKIFLHVYDDETPDTKSLKLV
VLKFEYFLKLNVVCVGVEGSPDGPEKNIFSNLFPDDAGLEPPHQSTKLILGDGQVFDENR
TSRPYKWAQHLAGIDILPEVSPILFGQDTPDNVDTAKSDASVPDLSLYRQQHRVETVLQR
IRSRKKAHLALAEQLDMLMKHELPAVNCEDAPWALHKALCALDSWLQIRSSASKSCSLTL
SSVEQVPEPMEIDGDRRSLSGKEDVESIREDGELPSLVTATALITTSSDQTPSKVSSLAR
SRQLALMTKNLDSPISSKGKSPSFKKYEDDLDLVLDDDSEVDEPAGKNEARVEALGSVKA
DNSWVDYGAREFALVFSRKTDDGKLWKLEATVQISMEYPLRPPFFSLSLHTSSGNDNWTS
ESDHYNELRAMEAEVNLHMLKIVPSDQENYLISHQIRCLAMLFDYYMDDPSKRGTATSVV
DVGLCKPVDGKLLVRSFRGRDHRKMISWKDRGCASGYPC
NT seq 2460 nt   +upstreamnt  +downstreamnt
atggaggacggcgagatcgaggaaggaatggtgacggcggatgagtatccgacgtcggaa
gcagcgatggagacagtagcaacgccgagagagccggtgaaatctccactggagttgctt
cgagagagcaaaacatcagtggaagaaatcgtagggaggatgctctcaatcaaaaaagaa
ggaaacaacaaatccgagattcgagaactcctcacccagatgttcctcaacttcgtcaac
ctccgtcaggcgaatcgcgcgatattgacggaggaagacaaagtgaaggcggagacggaa
cgagcgaaaggcccagtcgatttcacgacgctgcaattgcacaatctcatgtacgagaag
agccattacgtcaaagctattaaggcttgcagagatttcaaatccaagtatccagacatc
gatctcgtttcagaagaagctttctttcgtgacgctcctgaagatcaatctgttgcaact
gatacttcccgtcttttgatgcccaaaaggctcaattttgagcttcatcagaggaaagaa
ttgtgtaagcatcgagcgagattggagcaaaagaagaagagtttactagaaaccattgcg
gagcgcaagaagtttctgtcaagccttcctctacacctcaagtctctcaagaaagcatcc
attccagttcagaaccagttgggtatacagcacaccaagaaactgaagcagcatagttta
gccgagctgcttcctcctcccctttatgtaatttactctcagcttttggcacaaaaggaa
gcttttcaagagagaatcgatttggagctacttgggagccttaaggatgctcaagcttat
gccagacagcaatctaataaggactctggcatgtcgagtaataatacagagaattctagg
ttggaggatgatggacctgatgacgatgatgatggacaaaggagaagaaagcggcctaag
aaagttactagcaaagaaggatctgacaaggcaggattattataccaagttcaccctctc
aaaattttccttcacgtatatgatgatgagactcctgatacgaagtccctcaagcttgtt
gttctcaagtttgagtactttctgaagctgaatgttgtatgtgttggcgttgaaggctct
ccagatggaccagagaagaatatattctctaacttattccctgatgacgctggacttgag
ccacctcatcagtcaaccaagctcattcttggtgatggtcaagtgtttgatgagaacaga
acttcaaggccttataaatgggcacaacatttggcggggattgatatcttacctgaagtg
tcacctattttattcggccaagatactcctgataacgttgacactgctaaaagtgatgcg
tctgtacctgatctctcactgtatcgccagcagcatagggtggaaacagtgctgcaaaga
atacgctcacggaaaaaagcgcatctggctcttgcggagcagcttgatatgcttatgaag
cacgagttgcctgctgtgaactgcgaagacgctccatgggcattgcataaagctctgtgt
gctttggattcctggttacagattcgatcttcagctagtaagtcgtgctctctgactctg
agtagtgtggaacaagttccagaacctatggaaatcgatggggatagaagatctctttct
ggtaaggaagatgttgaaagtattcgggaagacggagaacttccttctttggtcacagct
acagctttgataacaaccagctctgatcaaaccccatcaaaagtatctagtctagcaagg
tctaggcagttggctttgatgacaaagaacctggattctccaattagcagtaaaggaaag
tcaccgagtttcaaaaagtatgaagatgatttggatcttgttttggatgatgatagtgaa
gtagatgagccagctgggaaaaacgaagcgcgtgttgaagcgttgggctctgtgaaagct
gataattcatgggtagattatggtgcaagggagtttgcacttgtcttctccaggaaaaca
gatgatggaaaattgtggaagttagaagcaacggtccagattagcatggagtatcctctt
agacctcctttcttttctctgtctctccatacttcttctggaaatgacaactggacaagt
gagagcgatcattacaacgaactgcgtgctatggaagcagaggtgaaccttcatatgttg
aagattgtaccttcagatcaagaaaattatctcatatctcatcagatcagatgcttggca
atgttgtttgactattacatggacgacccatccaaaagaggaacagccacaagtgtggtt
gatgtcggtttgtgcaagcctgtagacggtaagcttcttgtgagatcattcagaggcaga
gatcaccggaaaatgatctcatggaaggataggggatgtgcctcgggttatccatgttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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