KEGG   Bordetella sp. J329: CBF45_10980
Entry
CBF45_10980       CDS       T05850                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
boj  Bordetella sp. J329
Pathway
boj03030  DNA replication
boj03430  Mismatch repair
boj03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:boj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CBF45_10980
   03430 Mismatch repair
    CBF45_10980
   03440 Homologous recombination
    CBF45_10980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:boj03032]
    CBF45_10980
   03400 DNA repair and recombination proteins [BR:boj03400]
    CBF45_10980
Enzymes [BR:boj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CBF45_10980
DNA replication proteins [BR:boj03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CBF45_10980
DNA repair and recombination proteins [BR:boj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CBF45_10980
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C tRNA_anti_2
Other DBs
NCBI-ProteinID: AZV94186
Position
complement(2478824..2482318)
AA seq 1164 aa
MTASLPATPFVHLRVHSEFSVVDGIIRIPELVKQAAAFGQPAVALTDLANLFGLVKFYKT
ARGAGIKPVAGCDVWLNNDDDPDKPFRILLLVRNWHGYLQLCDLLTRAWLGNTQRGRAQI
RREWLDGADGLIVLSGGRMGDIGQALEAGNPAAAEALARAWQARCPGSFYIELQRAGRDG
DEAYVQAAMRLAAKIGLPVVATHPVQFLKRDDFQAHEARVCIAEGELLGNPRRVRRFSDS
QYLQSSEEMAQRFADVPAALANTVEIARRCNLVMTLGEPQLPNFPTPDGISLDDYLVQLS
REGLEKRLAFLFPDEAQRARARPVYDERLERECRTIIQMGFPGYFLIVADFINWGKGNGV
PVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDVDFCQDNRERVIE
YVKERYGRDAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKMIPFNPADPWTLERT
LENEPAFRERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGS
ETSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRYVRQFNPTMRDFDVMALPLDDGN
AYRLLCEGNTTAVFQLESRGMKELLKKLRPSNFEDVIAMLALYRPGPLESGMVDDFVDRK
HGRADVDYFHPDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEM
AKHRELFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKHYHPA
EFLAATLSSDMDDTDKVQIFVRDALDNGVKVLPPDVNASAYRFEPVEDEYTAQGKPPRTM
RYGLGAVKGTGQGAVEEILRVRQSGPFRDLFDFCRRIDRHTVNRRTIEALIRAGAFDGLD
DNRAALLASVPLAMEAADQAARSADQVSLFGDDDAAIVVAGELAKVPPWDLRTRLTEEKA
ALGFFFSGHLFDAWRDEVRRFVPTPLTRIGPSRELQWLAGALSSVRTQLTRRGKMLFAVL
DDGTAQLEVSVFNELYEQNRNRLREDQLLIVQGKVSHDDYSGGTRIVAESLFDLQAARET
RAQALRLTLPADKADAAALRRVLNPFRAEPENGVPGVPVEIFYQRHDATALIRLGESWRV
RMADQMFDNLAAWLGTGAVEIRYD
NT seq 3495 nt   +upstreamnt  +downstreamnt
atgactgcatcgcttcccgctactcccttcgtccatctgcgcgtccattccgaattctcg
gtggtggatggcatcatcaggatacccgaactggtcaaacaggccgcggcgttcggccag
ccggccgtggcgctgaccgacctcgccaacctgttcggcctggtcaagttctacaagacc
gccagaggcgccggcatcaagcccgtggcgggctgcgatgtctggctcaacaatgatgac
gatccggacaagccgtttcgcattctgttgctggtgcgcaattggcatgggtacctgcag
ctgtgcgacctgctgacacgcgcctggctgggcaacacgcagcgcgggcgcgcgcagata
cggcgcgaatggctcgatggcgccgatggcctgatcgtgctttccggcggccgcatgggc
gatatcggccaggcgctggaagccggcaacccggcggcagccgaagcgctggcgcgtgcc
tggcaggcgcgttgtcccggtagcttctatatcgaactgcagcgtgccggccgcgatggc
gacgaagcctatgtgcaggctgccatgcgcctggcggccaaaatcggcctgcctgtggtg
gcgacgcatccggtgcagtttctcaagcgcgacgatttccaggcgcacgaggcccgggta
tgcatcgccgagggtgaattgctgggcaatccccgccgcgtgcgtcgtttcagcgacagc
cagtacctgcaaagctccgaggaaatggcgcagcgttttgccgatgtgcctgcggcgctg
gccaataccgtggaaattgccaggcgctgtaacctggtgatgacgctgggcgaaccgcaa
ctgcccaactttcccacgcccgacggcatctcgctggacgattatctggtgcagctgtcg
cgcgaaggcctggaaaagcgcctggcgttcctgttccctgatgaagcgcagcgagccagg
gcgcggcctgtctacgatgagcgcctggagcgcgaatgccgcaccattatccagatgggc
tttcccggttacttcctgatcgtggcggacttcatcaactggggcaagggcaatggcgtg
ccggttggtccgggccggggctcgggtgcgggttcgctcgtggcctacagcctgggtatt
accgacctcgaccccatccgttatgacttgctgttcgagcgcttcctgaacccggagcgg
gtgtccatgcctgacttcgacgtggatttttgtcaggacaaccgcgagcgggtgatcgaa
tatgtgaaggagcgctatggccgcgatgccgtgagccagatcgcaaccttcggtacgttg
ggtgccaaggcggtggtgcgcgacgctggccgggtgctggacatgccctacatgttctgc
gatggcctgtcgaaaatgattcccttcaatccggcggatccctggacgctggagcgtacg
ctggaaaacgagccggccttccgtgaacgctatgagcaggaagaggaagtccgggcgctg
gtggacctggccaggccgctggaaggcctgacgcggaatatcggcatgcacgccggcggc
gttctgatcgcgccgggcaagctgaccgacttctgcccgctgtactgccagcccggcagc
gaaaccagtgtggtgtcgcagtacgacaaggatgacgtcgaagccgtcggcctggtgaag
ttcgacttcctggggctgcgcaacctgaccattctggattgggcagtgcgctatgtgcgc
cagttcaatcccaccatgcgtgatttcgacgtcatggcgctgccgcttgatgacggcaat
gcctaccgtctgctgtgcgaaggcaacaccacggccgtcttccagctggaatcgcgcggc
atgaaggaattgctcaagaagttgcgccccagcaactttgaagacgttatcgctatgctg
gcgctctaccggccggggccgctggaatccggcatggtggatgatttcgtcgaccgtaaa
cacggccgtgccgacgtcgattatttccatcctgacctggagtccacgctcaagagcacc
tacggcgtgattgtgtatcaggaacaggtgatgctgatctcgcagatcatcgggggctat
tcgctgggcggcgccgacttgctgcggcgcgccatgggcaagaaaaagcccgaggaaatg
gccaaacaccgcgagctgttcgagaaaggcgcggtagagaagggctatgacgccgacctg
gcggtcaagctgttcgatctgatggaaaagttcgcgggttatggcttcaacaagtcgcac
tcggccgcctatgcgctgatttcctaccagacggcctggctcaagcactaccatccggcc
gagttcctggccgccacgctgtcgtccgatatggacgacaccgacaaggtccagattttc
gtgcgcgacgcgctggataacggcgtcaaggtgttgccgccggacgtcaatgcgtcggcc
taccgcttcgagccggtcgaggatgaatataccgcgcagggtaagccgccacgcaccatg
cgctacggcctgggcgcggtcaagggcacgggccagggcgccgtcgaggaaatcctcagg
gtgcgccagtccgggccgttccgcgacctgttcgatttctgccgacgtattgaccgccat
accgtcaaccggcgcaccatcgaagcgctgatccgcgctggcgccttcgatggcctggac
gataaccgcgctgcattgctggcgtcggtgccgttggccatggaggctgcggaccaggcg
gcgcgcagcgccgaccaggtatcgctgtttggcgatgatgatgccgccatcgtggtggcc
ggcgaactggccaaggtgccgccctgggacttgcgtacccgtctcaccgaggaaaaagcg
gcgctgggcttctttttcagcggccacctgttcgatgcctggcgcgacgaggtacggcgc
ttcgtacccacgccgctcacgcgcatcgggccgtcgcgcgagttgcaatggctggccggc
gccctcagttccgtgcggacgcagctcacgcggcgcggcaagatgctgttcgcggtgctg
gatgatggcactgcccagctggaggtgtcggtcttcaatgaactctatgagcagaaccgc
aaccgcttgagggaagaccagttgctgatcgtgcagggcaaggtgagccatgacgattac
tcgggtgggacgcgcatcgtggccgaatcgctgttcgacctgcaggcagcacgcgagacg
cgtgcccaggcgctgcgtttgaccttgccggcggacaaggccgatgcagccgcgttgcgg
cgcgtgctcaatccgttccgcgccgaaccggaaaacggcgtacccggcgtgccggtggaa
attttctaccagcggcacgatgccacggcgttgatccggctcggggagtcctggcgagta
cggatggcagatcaaatgtttgacaatttggctgcttggctagggacaggagctgtagag
atccgttacgattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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