KEGG   Rhodophyticola sp. CCM32: E2K80_17615
Entry
E2K80_17615       CDS       T05925                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
boo  Rhodophyticola sp. CCM32
Pathway
boo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:boo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    E2K80_17615 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boo03021]
    E2K80_17615 (rpoC)
   03400 DNA repair and recombination proteins [BR:boo03400]
    E2K80_17615 (rpoC)
Enzymes [BR:boo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     E2K80_17615 (rpoC)
Transcription machinery [BR:boo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     E2K80_17615 (rpoC)
DNA repair and recombination proteins [BR:boo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      E2K80_17615 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: QBY02331
UniProt: A0A4P7JGH3
Position
3601820..3606028
AA seq 1402 aa
MNQELTNNPFNPLTPQKAFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPVKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMSEEEFMDAQDAYGADAFQ
ANIGAEAIREMLQNIDLEAEAAQLREDLKEATGELKPKKIIKRLKIVENFLESGNRPEWM
ILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMKGEGMVFASVEEVEHAL
NAGEVHLHAKITARLKQIDEEGNEVYERFETTPGRIRLGSLLPLNAKAPFELVNRLLRKK
EVQQVIDNVYRYCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMLIPDTKWTLVDETRG
QVKEFEQQYMDGLITQGEKYNKVIDAWSKANDKVTDAMMGSISAKVTDDDGAEQEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMIDCGTENTITAEAAVNDGEVVSSLAERILGRT
AGEDVLVPGTDEVILTKGELIDERKADAVEQAGVVSMQIRSPLTCEAEEGVCATCYGRDL
ARGTRVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEAGADGKIEFRNAN
LLENAAGEIIVMGRNMVMAIMDEHGAERASFKLGYGTKVHAAEGAEVTRGDRLFEWDPYT
LPIIAEKAGSVRFVDLAVGTALRDETDDATGMTQKIVMDWRAAPKGNELKPEILVVGEDG
EPVRNDAGNPVTYPMSVDAILSVEDGQTIEAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEKDGYVKFGRDFKNKRRIAVVPAEDGQEPVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGETTLLKGENVDKAEFDEANEKALAEKRRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRRIATERDAVVIEAARA
EAEAAAALAAPDESESGESAAE
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgaaccaggaactgaccaacaacccgtttaacccgctgaccccgcaaaaggcctttgac
gagatcaaagtcagcctggcgagccctgagcggattctgtcatggtcctatggcgagatc
aaaaagcccgagaccatcaattaccggaccttcaagcccgagcgtgacgggctgttctgc
gcccgtatctttggcccggtcaaagattacgaatgcctttgcggcaagtacaagcgcatg
aagtatcgcggcgttgtctgcgagaaatgcggtgtggaggtgaccctgcaaaaggtccgc
cgcgagcggatgggccatatcgaactggccgcgcccgtcgcccatatctggttcctgaaa
tcattgccgagccgcatcggcctgatgctggacatgaccctgcgcgatctggaacggatt
ctctatttcgagaattatgtggtgatcgagccgggcctgaccgatctgacctatgggcaa
ctgatgtccgaagaagagttcatggatgcgcaggacgcttatggcgccgatgcgttccag
gccaatatcggggccgaagccatccgcgagatgttgcagaatatcgaccttgaggccgaa
gccgcgcaactgcgtgaagacctgaaagaggccaccggtgagctgaaaccgaagaagatc
atcaagcggctgaaaatcgtcgagaacttcctggaatccggcaaccgcccggaatggatg
atcctgaccgttgtgccggtgatcccgccagagctgcgcccgctggtgccgctggacggg
ggccggtttgcgacctctgacctgaacgatctgtatcgccgggtgatcaaccgcaacaac
cgtctgaaacggctgatcgaactgcgcgcgcccgacatcatcatccgcaacgaaaagcgg
atgttgcaggaatccgttgatgcgctgtttgacaatggccgtcgtggccgggtgatcaca
ggggccaacaagcgcccgctgaaatcgctttccgacatgctgaaaggcaaacagggccgg
ttccgtcagaaccttctgggcaaacgggtcgatttctcgggccgttcggtgattgtgacc
gggccggaactgaagctgcatcaatgcggcctgcccaagaagatggcgctggagctgttc
aaacccttcatctattcgcggctggaggccaagggcctcagcagcacggtgaagcaggca
aagaaactggttgagaaagagcgccccgaggtctgggatatcctggatgaggtgatccgc
gaacatccggtgcttctgaaccgggcgccgacgctgcaccgtctgggcattcaggcgttc
gagccgacgctgatcgaaggcaaggcgatccagctgcatccgctggtctgttccgcgttc
aatgccgatttcgacggcgaccagatggctgttcacgtgccgctttcgctggaggcacag
ctggaagcacgcgttctgatgatgtcgaccaacaatgttctgtcgccggccaacggcgcg
ccgatcattgtgccctcgcaggatatgatcctgggtctctactatgtgaccctggaacgc
gaaggtatgaagggcgaaggcatggtctttgcctcggtcgaagaggtggaacatgccctg
aacgccggtgaggtgcatctgcacgccaagatcaccgcgcgtctcaagcagatcgacgag
gaaggcaacgaggtttatgagcggtttgaaaccacgcccggccggatccgtctgggcagc
ctgctgccgctgaatgccaaggcgccgtttgaactggtgaaccgtcttctgcggaagaaa
gaggtccagcaggtgatcgacaatgtctatcgctattgcggtcagaaagagtcggtcatt
ttctgcgatcagatcatgacgcttgggttccgtgaggcattcaaggccggtatctccttc
ggcaaggatgacatgctgatccccgacaccaaatggacgctggttgacgagacccgcggc
caggtgaaggaattcgaacagcaatatatggatggcctgatcacccagggtgagaagtat
aacaaggtcatcgacgcctggtcgaaagccaatgacaaggtcactgacgccatgatgggt
tccatctcggccaaggtgaccgatgatgacggcgccgaacaggagccgaactcggtctat
atgatggcccattccggcgcccgtggctctgtcacccagatgaagcagctgggcgggatg
cgcgggctgatggccaaaccctcgggtgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccggaaaggcctg
tcggacaccgcgttgaagaccgcgaactcgggctatctgacccggcgtctggtggatgtg
gcgcaggattgcatcgttcggatgattgattgcggcaccgagaacacgatcaccgccgag
gccgccgtgaatgacggggaggttgtgtcctccctggctgagcggattctgggccggacc
gcgggtgaggatgtgctggtgccgggcaccgatgaggtgatcctgaccaagggagagctg
attgacgaacgcaaggccgatgcggtggaacaggccggtgtcgtgtcgatgcagatccgc
tcccccctgacctgcgaggccgaggagggcgtctgtgccacctgttatgggcgtgatctt
gcgcgcggcacacgggtgaatgtgggcgaagctgtcggcatcatcgccgcacaatccatt
ggtgagccgggtacacagctgaccatgcggaccttccatatcggcggtgtggcccagggt
ggccagcaatccttccaggaggcgggtgcggacggcaagattgaattccgcaatgccaac
ctgctggaaaacgccgccggtgagatcatcgtcatggggcgcaacatggtcatggcgatc
atggatgagcatggggccgaacgggcaagcttcaagcttggctatggcaccaaggttcat
gccgccgaaggtgccgaggtgacacgcggtgaccgtctgttcgaatgggacccgtatacc
ctgccgatcatcgccgaaaaggccgggagcgtgcggtttgtcgatctggcggtgggcacg
gccctgcgggacgaaaccgatgatgccaccggcatgacccagaagatcgtgatggactgg
cgcgcggcccccaagggcaacgagctgaagcccgagatccttgtggtcggtgaagatggc
gaaccggtccgcaatgacgcgggcaacccggtgacctatccgatgtcggtggatgcgatc
ctgtcggtcgaggatggccagaccatcgaggccggtgatgtcgtcgcccgtatcccgcgt
gaaggcgccaagaccaaggacatcaccgggggtctgccccgggtggcggaactgttcgag
gcgcggcgcccgaaagaccatgcgattatcgccgagaaggatggctatgtgaaattcggc
cgcgacttcaagaacaagcgccggattgcggtggttcccgccgaagacgggcaggagccg
gtggaatacatggtgccgaagggcaaacacatccccgttgccgagggcgatttcgtccag
aaaggcgactacatcatggatggcaacccggcgccgcatgacattctgtcgatcatgggt
gtcgaggcgctggccgattacatgatcgacgaggtgcaggatgtgtaccggttgcagggc
gtgaagatcaacgacaagcatatcgaggtgatcgtccgccagatgttgcagaaatgggag
atcctggattcaggggaaaccacgctgctgaaaggcgaaaacgtcgataaggccgagttt
gacgaggccaatgaaaaggcccttgccgaaaaacgccgcccggcaacgggggagccgatt
ttgctggggatcaccaaggccagcctgcagacccggtcgttcatctcggccgcatcgttc
caggaaaccacccgcgtgctgaccgaagcctcggtgcagggcaagcgcgacaagctggtg
gggctgaaagagaacgtcatcgtcggccgcctgatcccggcgggcaccgggggcgccacg
cagcgggtgcgccggattgcaaccgaacgtgacgcagtggtgatcgaagcagcccgtgcc
gaggccgaagcggctgccgcactggccgcccccgacgagtctgagagcggggaaagcgcg
gcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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