KEGG   Orrella marina: DBV39_05790
Entry
DBV39_05790       CDS       T05532                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
boz  Orrella marina
Brite
KEGG Orthology (KO) [BR:boz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:boz03009]
    DBV39_05790
Enzymes [BR:boz01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     DBV39_05790
Ribosome biogenesis [BR:boz03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    DBV39_05790
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM Methyltransf_25 Cons_hypoth95 RrnaAD MTS Methyltransf_23 Met_10 Methyltransf_11 Methyltransf_15 Methyltr_RsmB-F Methyltransf_4 PCMT TPMT
Other DBs
NCBI-ProteinID: AWB33295
UniProt: A0A2R4XHL7
Position
complement(1300446..1301765)
AA seq 439 aa
MRSAPPEVRVQIESLDHDARGVGRIDGKVVFVDDALPGEAVMAQVYRKKPSYNLARTKSV
LRTSWMRVKPRCKHYGVCGGCSMQHLDPVAQVAVKQRVLEDAFGHLGNLRPEQVLPPIYG
PFWGYRFRARLTVRYVARKGEVLVGFHERKSSFVADMTSCQVLPERVSNLLVPLRRLIES
LSIPERLPQIEVAVGTEVVALVLRHLDPLSEEDLAKLREFASARQVQWWLQSKGPDTVHL
LDHQAPTELAYTLPEFDVRMPFKPTDFTQVNHQINQRLVSRALALLEPGVNDRVLDLFCG
LGNFTLPLARVSKEVVGIEGSQVLVDRAFQNAELNGLSNTRFEARNLFEMTLEDLTALGR
FDRMLIDPPREGAMAVCEALAVLDPEMRPARIVYVSCNPATLARDAALLHHNGGYHLRAA
GVVNMFPHTGHVESIAVFE
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgaggtcggcgccccctgaagtacgtgtacaaatcgagtcactggatcatgatgcacga
ggtgtcggacgaatcgatggcaaagttgtctttgtagacgacgccttgcctggtgaagct
gtcatggcacaggtttatcgcaagaagccttcctacaatcttgccaggaccaaatctgtg
ctgcgcacctcatggatgcgcgtcaaaccacgctgcaagcattatggagtctgtggtggc
tgctctatgcagcatctcgatccagtcgctcaggttgctgtcaagcagcgagtcctcgaa
gatgctttcggacacctcggcaatcttcgacccgagcaagtgcttcctcccatttacggc
cctttctgggggtaccgctttcgagcccgactgacagtccgttacgttgcccgcaaaggg
gaggtgctggtcggatttcacgagcgcaagagcagcttcgtggccgacatgacgtcctgt
caggtcttgcccgagagggtcagtaacctgctcgtgcctttgcgtcggttgattgagtcg
ttgagtatccctgagcgtctgccacagattgaggttgccgttggtaccgaagtggttgca
ctggtgctgcgtcaccttgatccattgagcgaggaggaccttgcaaagctgcgtgagttt
gccagcgcccgccaggtccagtggtggttgcagtccaaaggtcctgacacggtgcatctg
ctggatcaccaggcacctacagaactggcctacaccctcccagagtttgacgtgcgaatg
ccgttcaaaccgactgactttacgcaggtcaatcaccagatcaaccagcgtctggtctct
cgtgcgctggctttgctggaacccggggtgaacgatcgggtgctggatcttttctgcggg
ctgggtaattttaccttgccgctggccagggtcagcaaggaagtggttggcattgaaggc
agccaggtgctggttgacagggcatttcagaatgctgagcttaacggtttgtccaacacc
cggtttgaggctcgcaatttattcgagatgaccctggaggatctgactgctctgggtcga
tttgaccgaatgctgatcgatccgccacgcgagggtgcgatggccgtatgtgaggcgctg
gcggtccttgatcctgagatgcgcccggcgcgcatcgtttacgtatcgtgcaatccggcg
acccttgccagagatgcggctcttctgcatcacaacggggggtatcatttgcgtgctgct
ggtgtcgtcaatatgttcccccataccggtcacgtagaatcgattgccgtgttcgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (24)   

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