KEGG   Borrelia parkeri: X966_02785
Entry
X966_02785        CDS       T03987                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bpak  Borrelia parkeri
Pathway
bpak03030  DNA replication
bpak03410  Base excision repair
bpak03420  Nucleotide excision repair
bpak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bpak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    X966_02785 (ligA)
   03410 Base excision repair
    X966_02785 (ligA)
   03420 Nucleotide excision repair
    X966_02785 (ligA)
   03430 Mismatch repair
    X966_02785 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpak03032]
    X966_02785 (ligA)
   03400 DNA repair and recombination proteins [BR:bpak03400]
    X966_02785 (ligA)
Enzymes [BR:bpak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     X966_02785 (ligA)
DNA replication proteins [BR:bpak03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     X966_02785 (ligA)
DNA repair and recombination proteins [BR:bpak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     X966_02785 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X966_02785 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     X966_02785 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      X966_02785 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 PTCB-BRCT HHH_2 DNA_ligase_A_M DNA_ligase_ZBD Auto_anti-p27
Other DBs
NCBI-ProteinID: AHE62869
Position
567217..569223
AA seq 668 aa
MIKDIEDEILCLRDNIRKWNKEYYVDSSPSVSDLTYDKALLRLQDLESKYPEYKTLDSPT
LKFGSDLLNNFEEVKHSFPILSLDKAYDIKELLLWIEKMVLEGSSLGSYTGISVEPKIDG
CSIVLYYKDGILKRALTRGDGRVGNDVTENVRTIKNVPLSIDEKVELVLRGEIYITKENF
LKINHTLKNPYLNARNLASGILRRINSREVASFPLDIFVYDILYSSLGLSTNHDAFDKLK
KFGFKINPFCKFFGGKNLEEITNHVKKIEMQRNFLEYEIDGVVLKVDSFILREILGYTSH
HPKWSIAYKFESCTGVSKIVDIVVQVGRSGKITPVAHVEKVFVAGAFITNASLHNQDYID
SIGLNIGDVVAISRRGDVIPAVELVVEKLAIGSFKISSNCPSCKMVLIKEGSHLFCVNKH
CPYRIIEQIKYFCSKKCMNIVGLSGKTIEFLFEMKFISSEIELYTFNFDRLINLRGFDLK
RIDNLKRSISDSKGRPFRKLLLGMGIKELGANTILVLINNNLNSFDIISTLCKNKEAALA
KLLKIKGIGERIALNIIEAFNDKTILDKFIFFKELGFKLEECNTNYAVDDSFLFGKNFCI
TGSFEGYSRDILIEKITKKGAIFNRAVTKSLDFLLVGEKPGLKLKKANNLGIKTFGLSDI
KDFVDLDN
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgatcaaagatatagaagatgaaattttatgtttaagagataatatcagaaaatggaat
aaagaatattatgttgattcctcacccagtgtgagtgatttgacttatgataaagctctt
ttaagacttcaagatttggaaagtaagtatcctgaatataaaactttggattctcccact
cttaaatttggaagcgatcttttaaataattttgaagaggttaaacattctttccctata
ttgagtttggataaggcttatgatattaaggaattattattgtggattgagaaaatggtc
ttagaaggttctagtttggggtcttatactggcatctcagttgaacccaaaattgatggg
tgttcaattgttctctattataaagatggaatactgaagagagctttgactaggggagat
ggaagggttggtaatgatgttactgagaatgttagaacaattaaaaatgttcctttgtct
attgatgaaaaggttgaattggtattgaggggtgaaatttatattactaaggaaaatttt
ttgaaaataaatcacacattaaagaatccttatcttaatgctagaaatttagcctcaggt
atactaagaagaataaatagtagagaagttgctagttttcctttagatatttttgtttat
gatattttatattctagtttgggattgagtactaatcatgatgcgtttgataaacttaag
aaatttggatttaaaattaatcctttttgtaaattttttggtggtaaaaacttagaagaa
attactaatcatgttaaaaagatagagatgcaaagaaattttttagaatatgaaattgat
ggtgttgtgttgaaagttgatagctttattttaagggaaattttaggatatacttctcat
catccgaagtggtcaatagcttataaatttgaatcttgcacaggcgtaagcaaaattgtt
gacatagtcgttcaggttggccgcagtggcaaaattactcctgttgcacatgtggagaag
gtatttgttgcgggggcttttattactaatgcaagtcttcataatcaagattatatagac
tctattggcttgaatattggagatgttgttgcgatttcaagacgtggagatgtgattcct
gctgttgaattggtggtagaaaagcttgcgattggtagttttaaaatttctagtaattgt
ccttcatgtaaaatggttttaattaaagagggttcacatcttttttgtgtaaataaacat
tgtccttatcgaataattgagcaaataaaatatttttgtagtaagaaatgtatgaatatt
gtaggactttcagggaaaacaatagagttcctttttgaaatgaagtttatatcttcggag
attgagctttatacttttaattttgatagacttattaatttgaggggttttgatcttaag
agaatagataatttaaagcgttcaattagtgatagtaaaggtaggccatttagaaagttg
cttcttggtatgggaattaaggagcttggagcaaatacaatattggttttaattaataac
aatttaaactcgtttgatataattagtactctttgcaaaaataaagaggctgctcttgcc
aaacttttgaagattaagggaataggtgagaggatagctttaaatattattgaagctttt
aatgataagactattcttgataagtttattttttttaaagaattagggtttaaattggaa
gaatgtaatactaattatgctgtggatgattcttttttatttggcaaaaatttttgtatt
acaggttcttttgaagggtattctagagatattcttattgaaaagattactaaaaaaggt
gctattttcaatagggcagttactaagagtttagattttttacttgttggagagaaacct
ggattaaaattgaaaaaagccaataatttgggaataaaaacctttggtctttctgatatt
aaagattttgtggatttagataattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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