KEGG   Bordetella pertussis Tohama I: BP3556
Entry
BP3556            CDS       T00139                                 
Name
(GenBank) bacteriophage-related DNA polymerase
  KO
K21929  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
bpe  Bordetella pertussis Tohama I
Pathway
bpe03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BP3556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpe03400]
    BP3556
Enzymes [BR:bpe01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     BP3556
DNA repair and recombination proteins [BR:bpe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     BP3556
SSDB
Motif
Pfam: UDG Fer4_8
Other DBs
NCBI-ProteinID: CAE43815
UniProt: Q7VTI2
Position
3767355..3768251
AA seq 298 aa
MSAPEAAAPAAPRPNPLQRIWLREIGIEKTWLPAPLASAAGAVAPAAPAAEAANAAVATA
EAVRPAAATPRADGPAASPTRAPRPPVAAPQRAEPAAEADGQAARAAVAARAAGADLGQL
QQLVQDCTACGLCQGRRHAVFGMGAQPARWMVVGEAPGEQEDRQGLPFVGRSGKLLDAML
QSVGMSRERDVFIANVIKCRPPGNRNPKPEEIAACSPYLRRQIALLNPERILVLGRFAAQ
TLLNTEATIGNLRGRVHSLQTDEGRSIPVVVSYHPAYLLRSPAEKARAWQDLLLAARG
NT seq 897 nt   +upstreamnt  +downstreamnt
atgagcgcgcctgaagccgccgcgccggccgcgccgcgtccgaatccgctgcagcggatc
tggctgcgcgagatcggcatcgagaaaacctggctgccggcgccattggcgtccgcggcc
ggggctgtcgcgcccgccgcgcctgccgccgaggccgccaatgcggccgtggcgacggcc
gaggccgtccggccggcggccgcgaccccacgcgccgatggcccggcggccagtccgacc
cgcgcgccgcgcccgccggtggccgcgccgcagcgcgccgaaccggccgccgaggccgac
ggacaggccgcgcgggccgccgtggcggcgcgggcggccggcgccgacttggggcaattg
cagcaactggtgcaggactgcaccgcctgcggcctgtgccaggggcggcgccacgccgta
ttcggcatgggcgcccagccggcgcgctggatggtggtgggcgaggcgcccggcgagcag
gaagaccgccaggggctgccattcgtcggccgctcaggaaagctgctggatgcgatgctg
cagtcggtgggcatgagccgcgagcgcgacgtgttcatcgccaacgtcatcaagtgccgc
ccgcccggcaaccgcaatcccaagcccgaggaaatcgccgcctgcagtccctacctgcgg
cgccagattgccctgctgaacccggagcgcatcctggtgctgggccggttcgcggcccag
acgctgttgaacaccgaggccacgataggcaatttgcgcggccgcgtgcacagcctgcaa
accgacgaggggcgctcgattcccgtggtggtcagctaccacccggcctatctgttgcgc
agcccagccgagaaggcgcgcgcctggcaagacctgctgctggcggcgcgcggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system