KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110165995
Entry
110165995         CDS       T05002                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    110165995 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110165995 (lig4)
Enzymes [BR:bpec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110165995 (lig4)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     110165995 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_A_C DNA_ligase_IV BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 110165995
NCBI-ProteinID: XP_020786852
Position
Unknown
AA seq 921 aa
MEGSSNNVASTSSSSSSSSSSSASPSVAAQVPFLHLCNTLERIQKAKTRPEKSKILGDFM
ETWRKFHSVLHKENPKTTDSFYPAMRLIVPAFERERMAYGIKENMLAKLYIDVLGLPKNG
PEANKLLNYRAPTSTQGEAGDFAGMAFFVLKKRCTGDGKLTIKEVNDFLDSVAINNANKK
KDLVRQSLLHLITQSSALEQKWLIRMIIKDMKISISKETVLQVFHSDAPELYNVNTDLKK
VCLQLHDPAVSLSEVSIGLFSAFKPMLAAVANLRNIEKQMSNSPFYIETKLDGERIQLHK
DGDVYKYFSRNAFEYTQQFGGSPLEGSLTPYIHNVFKSDVVNCILDGEMMAYNPTAETFM
QKGSKFDIKKLMEDSELQTCFCVFDVLLVNDRKLGKETLKKRYEILQTVFTPVKGRIHIV
PKTEVKSTKEVINALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELD
LLIVGGYWGKGRRGGMMSHFLCAVAEAPKPGETKPSVFHTLCRIGSGYTMKELYDLGLKL
AKHWKVYKKNDPPASILCATEKPEVYIEPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIE
KIRDDKEWHQCTTLAELDQFRSKASGKLASRHLSLEDGAPQKKKRKVPVKPKKVVGVVEH
FKPQDLSGVQKETDMFEDVEFCVINGTEEHDKAALERGVASCGGIVVQNPGPDTYCVLVG
AENMRVKNLVASNKHDVVRAAWLLECLERKEMVPWQPRHMISMTPSTREYFAKKYDRYGD
SYDVDTDAEQLREVFDRITSVDVEVEAARVEQRYGWEDLPTSMFRPFAAYMDRFEDIGES
RVPRAGSVLDVRALEFELHGGRVERRLEEGVTHVVVQDEGSVLELRTLRRTFRRKFKIVR
DSWVTDSISAGFVLDDHDYLV
NT seq 2766 nt   +upstreamnt  +downstreamnt
atggagggttcgtccaataacgtcgcatctacctcctcctcttcctcctcgtcttcctct
tcttcggcctcgccctctgtcgccgctcaggtcccgttccttcacctctgcaacactttg
gagcgaatccaaaaggccaaaacgcgcccggaaaaatccaaaatcctgggagacttcatg
gaaacctggcgaaagttccactcggttttacacaaagaaaatcccaaaaccacagactcg
ttttacccggcaatgcgtcttatcgtgccggcgttcgaacgggagcgcatggcgtacggc
atcaaggaaaacatgctcgcgaaactgtacatcgacgtcctggggctgccgaaaaacggg
cctgaagcgaataaacttttaaattaccgcgcgccgacttctacgcaaggagaggccggc
gatttcgctggaatggccttctttgttttgaaaaagcgctgcactggtgatggcaaactt
accataaaagaagtcaacgattttctagattctgtggcgattaacaacgcaaacaagaag
aaggacttggtcaggcaaagtttgctgcatctcatcacgcagagttcggcgttggagcaa
aaatggttgatccgaatgattataaaagacatgaagattagtatcagtaaagaaacggtg
ctgcaggttttccactcggacgcgccagagctttacaacgtcaacacggacttgaagaaa
gtttgtctgcagctccacgaccccgcagtgtcgctgagtgaagtctcgatcggattattc
tccgcgttcaaaccgatgctcgccgccgtcgccaacctccgcaacatcgaaaagcaaatg
agcaacagccctttttacatcgagaccaaactcgacggcgagcgcatccagctgcacaaa
gacggcgacgtttacaagtacttcagccgcaacgccttcgagtacacgcagcagttcggg
ggctcgccgctcgagggctccctcacgccgtacatccacaacgttttcaaaagcgacgtc
gtgaactgcattttggacggggagatgatggcgtacaacccgaccgccgagacgttcatg
caaaagggaagcaagttcgacatcaagaagttaatggaggactccgagctgcagacgtgc
ttttgcgtgttcgacgttttgctggtgaacgatcggaaactggggaaggagacgttgaaa
aagcgatacgagattctgcagaccgtcttcacgccggttaaagggcgcattcacatcgtg
cccaaaaccgaagtgaaaagcaccaaagaggttataaacgctttgaacgacgcgatagac
ggacgcgaggaagggatcatggtcaaagatccgatgtccatctacaaaccagataaacgc
ggcgagggctggctcaaaatcaaacccgagtacgtcgacggtttgatggacgagctcgac
ttgcttatagtcggcggttattggggaaaaggcagacggggcggaatgatgtcgcacttt
ctctgcgctgtagccgaagcaccaaaaccgggagaaacgaaaccttcagttttccacacg
ctttgccgaatcggatcgggctacaccatgaaagagctttacgatctgggtttgaaactg
gcaaaacactggaaagtttacaagaaaaacgatccgccggcgtccattctgtgcgcgacg
gaaaagccggaggtttacatcgaaccgtgcaactccgtgatcatccaagtcaaagcggca
gagatcgtgagcagcgacatgtacaagacgaactgcacgctgcgctttccccggatcgag
aaaatccgagacgacaaagagtggcaccagtgcacgacgctggccgagctggatcagttc
cggagcaaagcgtcggggaagctggcgtcgcggcacctgagcctggaggacggagcgcca
cagaagaagaagaggaaggtcccggtgaagcccaagaaggtggtgggggtcgtggagcac
ttcaaaccacaggacctgagcggcgtccagaaggagacggacatgttcgaggacgtggag
ttctgcgtcatcaacggcacagaggagcatgacaaagcggcgctggagcggggcgtggcc
agttgcggcggtatcgtggtgcagaatccgggtccggacacgtactgcgtcctggtcggc
gccgagaacatgcgcgtgaagaacctcgtcgcctccaacaaacacgacgtggtgcgggcg
gcgtggctcctcgagtgcctggagcggaaggagatggtgccgtggcagccgcgtcacatg
atcagcatgacgccctccacccgggagtacttcgccaaaaagtacgaccggtacggcgac
agctacgacgtggacacggacgcggagcagctgcgggaggtgttcgacaggatcacgtcg
gtggatgtggaggtggaggcggcgcgggtggagcagcggtacggctgggaggacctgccc
acgagcatgttccgacccttcgccgcgtacatggatcgtttcgaggacatcggggagtcg
cgcgtgccgagggcggggagcgtgctggacgttcgggcgctggagttcgagctccacggg
gggcgggtggagcggcggctggaggagggggtgactcacgtggtggtgcaggacgagggc
tcggttctggagctcaggactttgcgcagaaccttcaggaggaagttcaagatcgtgaga
gactcgtgggtcacggactcgatcagcgccgggtttgtgctcgacgatcacgactacctc
gtttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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