KEGG   Burkholderia pseudomallei 1710b: BURPS1710b_A1335
Entry
BURPS1710b_A1335  CDS       T00289                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpm  Burkholderia pseudomallei 1710b
Pathway
bpm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BURPS1710b_A1335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpm03400]
    BURPS1710b_A1335
Enzymes [BR:bpm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BURPS1710b_A1335
DNA repair and recombination proteins [BR:bpm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BURPS1710b_A1335
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ABA51818
UniProt: Q3JIW1
Position
II:complement(1647681..1650623)
AA seq 980 aa
MRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRGRAAEPT
ERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGNGARS
GKGSGKGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFGLSGAKRAA
LPRTLRPQLATLVDTPTPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTREGLDWSAKF
AAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLNGF
DLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDGRY
VEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGERRTRGAAET
RDERRRASHASRTSRTSRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLR
ALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRE
DKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDDGARDAPALA
RHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASGRTRGGGRSASR
DRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAP
WLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALITIDDVKGL
VGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVS
FCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVD
YLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWR
AYAHVRQRVTAALRKRLSDG
NT seq 2943 nt   +upstreamnt  +downstreamnt
gtgcgcggccgcgggctgcgtgacagcggcggcaagcacgagcaatggctgctgatcaag
gaacgcgacggcgacgcgcgcgaccaagcggactacgacgtgctgcgcgcacggccgggc
agcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcgggcgcgcggccgagccgacg
gagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaagggcgcgccgaa
gcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcgggcgcgggtaag
ggcgcaagcaagcgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagc
ggcaagggcagcggcaagggcgcgggcgagggcgtggccacatcgcgccgcaaacgcgcc
gccgcgccgcagtcgtccgacgtcgattcggccgataccgattcacccgcggcgcgcggc
ctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgcgcggcg
ctgccgcgcacgttgcggccgcaactggcgacgctcgtcgacacgccgacgcccggcaaa
gactggctatacgaagcgaagttcgatggctaccgcgtgctgatccggatcgatcgcggc
gcggcgtcccgcccgattgccgtctacacgcgcgaggggctcgactggagcgcgaaattc
gccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgacggcgag
gcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcgctcggc
gccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaacggcttc
gacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtcgccgcg
catgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggccgccgatctgctg
acgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggccggtac
gtcgaggggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggagttcgtg
attggcggctacacggagccggccggacggcgcagcggattcggcgcgttgctgctcggc
gtgtacgcccgggcgccgggcgacgagggcgaacgaaggacgcgcggcgcggccgaaacg
cgcgacgagcggcgtcgtgcatcccacgcatcccgcacatcccgcacatcccgcacatcc
cgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcgg
ccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgc
gcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccgttcgcggacgtgccg
cgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaa
ttcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaa
gacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatg
aatgaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgcacc
ggcggacgcacgcggcgcaaagcacgtgacgacggcgcgcgcgacgcgccggcgcttgcc
cgccatccaaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggacggggag
gcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcg
acttcgccttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgc
gatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcacgcgccgcgc
gagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatc
gatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccg
tggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatc
ggcggcgagctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctg
cacccggggctcgatccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctc
gtcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaac
atcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgc
gcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcg
ttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcg
ggctgggacgatgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctg
cccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgac
tatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccg
gggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcg
caatggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgc
gcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatggg
tag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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