KEGG   Brachyspira pilosicoli 95/1000: BP951000_0851
Entry
BP951000_0851     CDS       T01278                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bpo  Brachyspira pilosicoli 95/1000
Pathway
bpo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BP951000_0851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpo03019]
    BP951000_0851
   03016 Transfer RNA biogenesis [BR:bpo03016]
    BP951000_0851
Enzymes [BR:bpo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BP951000_0851
Messenger RNA biogenesis [BR:bpo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BP951000_0851
Transfer RNA biogenesis [BR:bpo03016]
 Prokaryotic type
  tRNA degradation factors
   BP951000_0851
SSDB
Motif
Pfam: RNB S1 Rrp44_S1
Other DBs
NCBI-ProteinID: ADK30849
UniProt: D8ICH6
Position
946774..948738
AA seq 654 aa
MLRRIDKKGQVSIKDYKAEYVENKKDKLRFDKMLHKASSMGLIIKKGDILKLTKEGKYYL
DSSSNERDERQSSKKQEFKKSSSKKTSKKENSTKTNVIEKPDIKVEINNAKKDAEIVANA
YNIPTDFPKKCLEEAKILPDSMENVGLEFDRIDLRNIRTVTIDGADSKDFDDAISVEKLN
DGYKIGVHIADVSFFVAEGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLNEGVSR
FTMTVFITIDNKGNIKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLLELLKNADDI
KKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEEFMLLANCEVAKR
LKNIKGAIYRVHDSPDSEKLDTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLL
LTLLLRSMKQAIYDINNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKLSLEGAQNMKPS
MQKMFDNCAKWCSRTERVAVECERSLYKVKAARFMKEKVGKEYNGIISGITKFGIFVEIE
DRGIEGLIRYADLRHHYHYDENEQAAYSNEEAKWYTLGDKIRIVVHRVNIEELFIDFLPA
SEFDNALDDRDIIDSRDFLKKKKGSKNKKEIYSRKSKPFKNKSRKEKKKSKKKR
NT seq 1965 nt   +upstreamnt  +downstreamnt
ttgttaagaagaatagataaaaaaggtcaagtaagcataaaagactataaagctgaatat
gttgaaaataaaaaagataaattaagattcgataaaatgcttcataaggctagttctatg
gggcttatcataaaaaaaggtgatatattaaaactcacaaaagaaggaaaatactattta
gattcaagcagtaatgaaagagatgaaagacaaagttcaaaaaaacaagagtttaaaaaa
tcctcttccaaaaaaacatctaaaaaagaaaacagcactaaaaccaatgttatagaaaaa
cctgacataaaagtagaaataaacaatgcaaaaaaagatgctgagatagtagctaatgca
tataatatacctactgattttccaaagaaatgtcttgaagaagctaaaatacttccagat
agcatggaaaatgttgggcttgagtttgacagaatagatttaagaaacataagaaccgta
acaatagacggagcagattctaaagattttgatgatgctataagtgtagagaaattaaat
gacggatacaaaataggcgtgcatattgctgatgtaagtttttttgtagctgagggttct
gcattagacagggaagctagaaagagaggaaatagcgtttatttaattgatacagtatat
ccaatgtttccgcatgagctttcaaatggaatatgttctttaaatgaaggtgtgagcaga
ttcacaatgacagtgtttatcactatagataataaaggaaatataaaagaaagcactttt
cataaaagcgttataaagtcaagcagaagattaacttacgattatgcacaagatgttttg
gacggcatagaacaagatgaagattggctattagaacttttaaaaaatgctgatgacata
aaaaaaatacttcttcaaaaaagaatagataatggaagtatagagtttaaccttaatgaa
acacaaataatattagataaaggtggaaacccaaaagacttttttataggtgagagaaaa
gagactcataagataatagaagagtttatgcttcttgcaaactgcgaggttgctaagaga
ttaaaaaatataaagggtgccatttacagagtacatgacagtccagattctgaaaagcta
gacacatttagaagaatagcattcaacagaggctacagacttacaactgacaatgaaggc
aatttggattttcattcatttatagaatccattattggaaagcctgatgaaaaacttctg
cttaccctactcttacgctctatgaagcaggctatatatgatattaataatatagggcat
ttcggtcttggttttgaatattatactcatttcacttcgcctataagaagatatactgac
ttacttacacatagacttttaaaactatcattagaaggtgctcaaaatatgaaaccttct
atgcaaaagatgtttgataattgtgctaaatggtgctctagaacagagagagttgctgtg
gaatgcgagagaagtttgtataaagtaaaagctgcaagatttatgaaagaaaaagtaggc
aaagaatacaacggcatcataagcggaattactaaatttggtatatttgttgaaatagaa
gatagaggaatagagggcttaataagatatgcagatttgagacatcattatcattatgat
gaaaatgagcaggcagcatacagcaatgaagaagctaaatggtatactcttggagataaa
ataagaatagttgttcatagagtaaatatagaagagctatttatagactttttgcctgca
agcgaatttgataatgcattagatgacagagatataatagacagcagagattttttaaag
aagaagaaaggcagtaagaataaaaaagaaatatactcaagaaaatctaaaccttttaaa
aacaaaagcagaaaagaaaaaaagaaatctaaaaagaaaagataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system