KEGG   Burkholderia pseudomallei MSHR346: GBP346_A3872
Entry
GBP346_A3872      CDS       T00894                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
bpr  Burkholderia pseudomallei MSHR346
Brite
KEGG Orthology (KO) [BR:bpr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bpr03016]
    GBP346_A3872
Enzymes [BR:bpr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     GBP346_A3872
Transfer RNA biogenesis [BR:bpr03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    GBP346_A3872
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2
Other DBs
NCBI-ProteinID: ACQ96705
Position
I:complement(3718535..3719095)
AA seq 186 aa
MTMAGDRLRCFVALTLDRASRDALAALPVAAGARRTPRDQLHVTIAFLGAIERAKSELLG
ARIPALAAAGAVPPVDVERVVCWPSTAHARLVVAELAPQPSLLALGERVGGALRALGLPP
DSRAFKPHVTIARFPRDAHRVTIDGACGAERRTPLALRFETLTLYESVLTRMGAEHRVLA
AAALPA
NT seq 561 nt   +upstreamnt  +downstreamnt
atgacgatggcgggcgaccggttgcgctgcttcgtcgcgctgacgctcgatcgggcgtcg
cgcgacgcgctggccgcgctgcccgtcgccgccggcgcgcggcgcacgccgcgcgaccaa
ctgcacgtgacgatcgcgttcctcggcgcgatcgagcgcgcgaagagcgaactgctcggc
gcgcgcatccccgcgctcgcggcggccggcgcggtgccgcccgtcgacgtcgagcgcgtc
gtctgctggccgagcaccgcgcatgcgcggctcgtcgtcgcggagctcgcgccgcagccg
tcgttgctcgcgctcggcgagcgggtgggcggcgcgctgcgcgcgctcggcctgccgccc
gacagccgtgcgttcaagccgcacgtgacgatcgcgcggtttcctcgcgacgcgcatcgc
gtgacgattgacggcgcgtgcggcgccgagcgccgcacgccgctcgcgttgcggttcgaa
acgctcacgctctacgagagcgtcctcacgcgcatgggcgccgagcatcgggtgctcgcg
gcagcggcgctgccggcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system