KEGG   Butyrate-producing bacterium SM4/1: CL3_24390
Entry
CL3_24390         CDS       T02610                                 
Name
(GenBank) exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bprm  Butyrate-producing bacterium SM4/1
Pathway
bprm03410  Base excision repair
bprm03430  Mismatch repair
bprm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bprm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CL3_24390
   03430 Mismatch repair
    CL3_24390
   03440 Homologous recombination
    CL3_24390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bprm03400]
    CL3_24390
DNA repair and recombination proteins [BR:bprm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     CL3_24390
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     CL3_24390
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CL3_24390
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Cep57_MT_bd
Other DBs
NCBI-ProteinID: CBL36618
UniProt: D4MS82
Position
2139151..2140860
AA seq 569 aa
MAEEIWMLQTKRADFGVIAERFGIDPVTARVIRNRGIEGMENIERYLYGNLDGLYSPWLL
KDMKPAVEILRQKITAGKRIRIVGDYDIDGVCSTYILYTALRRLGAEADYAIPDRIKDGY
GINESIIREAHEDGIDTILTCDNGISAFSQISLAKEFGMTVIVTDHHEVPLDAEAEVIPP
ADAVVNPKQRDCRYPFPEICGAVVAYKLVEALYEEYGIAREEWLDMLEFAAIATVGDVMR
LQDENRIIVKYGLRRMAETKNLGLKKLAEKNNLDLSTITAYHIGFVIGPCLNAGGRLQTA
KLALSMLLAETEDEAEALAQELKSLNDMRKDMTEQWTAEAKLLADTRYRDDKVLVVFLPE
CHESLAGIIAGRLREYCQKPALVLTRGEEAVKGSGRSIEAYHMFKKLSEVKELLLKFGGH
PMAAGLSLLEENIEPFRKALNENSGLTEEDFKAKVWIDVPMPIDYIKERLVEELKILEPF
GQGNEKPLFAQKGVRIRSCRVIGKNKNVVKMVLEGQGGRAMDGMLFTDGLAFEEERNGRR
MLDIVYYPEINEYNGSRNIQVVIRRYRFC
NT seq 1710 nt   +upstreamnt  +downstreamnt
atggcagaggaaatttggatgcttcagacgaaacgggctgattttggggtgattgccgag
cggtttggaatcgatccggtgaccgccagagtgatcagaaaccgcggaatcgaggggatg
gagaatatagagcggtatctgtatggaaatctggacggcctgtattccccgtggcttttg
aaggatatgaaaccggctgtagaaattttgaggcagaaaattacagcgggaaagcggatt
cggatagtgggagactacgatattgacggcgtctgctctacctatattctgtatacagcg
ctcaggcgccttggcgcagaggcagattatgcgatccctgaccgcattaaggatggatat
ggaatcaatgaatccattatcagggaggcccatgaggatgggatcgacacaattctgacc
tgcgacaatgggatatcggccttttcacagatcagccttgccaaagagttcggcatgact
gtgattgtgaccgatcaccacgaggttcccctcgacgcagaggcggaggtgattccgccg
gctgacgctgtcgtaaatccgaaacagagagactgcagatatccatttccggaaatctgc
ggggccgtggtggcatacaagctggtggaggctctctatgaggaatacgggattgcgcgg
gaggaatggctggacatgctggaatttgcagccattgcaacagtgggagatgtgatgagg
ctccaggatgaaaacagaatcattgtcaaatacgggctccgcaggatggcagaaacgaag
aatctggggcttaaaaagctggcggaaaagaacaatctcgatttgagtacaataacggcc
taccacatcggattcgtcatcggtccctgcctgaatgccggaggcagacttcagacggca
aagctggccctgtccatgcttctcgcggaaacggaagacgaggcggaagccctggctcag
gagcttaagagcttaaacgatatgaggaaggatatgacagagcagtggacggcagaggca
aagcttttggctgacacccggtacagggatgacaaggttctggttgtatttctgccggaa
tgccacgaatctctggccggaattatcgcgggaaggctcagggaatactgccagaagccg
gcgctcgtgctgaccagaggagaggaggctgtgaagggctccggacgctccatagaggct
taccacatgtttaaaaagctgtccgaggttaaggagcttcttctcaagttcggagggcat
ccgatggcagccgggctctcgcttctggaagaaaacatcgagccgttccggaaggctctg
aatgaaaattccggcctgacagaggaggattttaaggcaaaggtgtggatcgacgtgccg
atgcccattgactacataaaggagagactggtggaggagcttaaaattctggagcccttt
ggccagggaaatgaaaagcccctgtttgcccagaaaggggttagaatcaggagctgccgg
gtaatcgggaaaaataagaatgtggtaaaaatggttctggaagggcagggaggacgggcc
atggacggaatgctgtttacagacggcctggccttcgaggaagagcgaaatgggcggaga
atgctcgacatcgtatattaccctgaaatcaatgaatacaacggcagcagaaatatccag
gtggtgatacgcaggtacaggttctgttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (69)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (83)   

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