KEGG   Bifidobacterium pseudocatenulatum: BBPC_1185
Entry
BBPC_1185         CDS       T03932                                 
Name
(GenBank) DNA topoisomerase IV subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
bpsc  Bifidobacterium pseudocatenulatum
Brite
KEGG Orthology (KO) [BR:bpsc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpsc03032]
    BBPC_1185
   03400 DNA repair and recombination proteins [BR:bpsc03400]
    BBPC_1185
Enzymes [BR:bpsc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BBPC_1185
DNA replication proteins [BR:bpsc03032]
 Prokaryotic type
  DNA Topoisomerases
   BBPC_1185
DNA repair and recombination proteins [BR:bpsc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BBPC_1185
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c
Other DBs
NCBI-ProteinID: BAR03863
Position
complement(1417397..1419796)
AA seq 799 aa
MKSRNSVRISNFSTSYVYKTFLWMKTEAKLQVRMRKMAKYKDNYGAGSLTVLEGLDAVRK
RPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIVVTLHSDGSVEVADNGRGIPVDI
EPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSVVNALSSRLDVEVDRDGKTHH
MSFHQGHPGVYTDADPEHPSPDAPFKRTRKNRPTELEIIGKVSPKTTGTRIRYWADPEIF
NDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPETGDESVDEMLEVDDIANAAGDEPQ
EIAESDESEHDAAGHEEAAEQIEEADVAAQPQGSKYTHSRIEEFCHTGGVKDFVDYLSKG
EAVSAIWRITGEDTYVEETQAVGDGGELHAQKVTRNCAVDIAMRWTNGYDTTMRSFVNVV
ETPGGGTHVDGYLLGLTKQIRKAIEDNARKLKVNLKDSNMKVERDDILAGLVAVVTVRIA
EPQFQGQTKDVLGTAQVKPIVSKMTDRQFGEMITGSKRGYKEQSGRVLEKIVGEMHARIQ
ARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSGFQALL
PIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDIEQARYNKVIMMTDADVDGAH
IRILLLTLFYCYMRPLIEYGHVYAAVPPLHRIALTGAHKGEYIYTYSDDELAGKLADLDK
KHISYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAEQASQIFSLLMGDDVPP
RKAFIVENADDFDRSKIDT
NT seq 2400 nt   +upstreamnt  +downstreamnt
atgaagtcgagaaattcggtaagaatatcgaatttctcgacttcttacgtctacaagacg
ttcttatggatgaaaaccgaagcaaaactgcaagtcagaatgaggaaaatggcgaaatac
aaggacaattacggcgcaggtagtcttaccgtgcttgaaggtcttgacgcggtgcgcaag
cgcccgggcatgtatatcggcaccaccgatagccaaggtctgatgcactgcctgtgggag
atcatcgataattccgtcgatgaggctcttgcgggagtctgcaatcatatcgttgtgacg
ttgcacagcgacggttccgtggaagtggccgataacggccgcggtatccctgttgacatc
gagccgaaaaccaaacttaccggtgtggaagtggtgttgaccaaattgcatgccggcgcg
aaattcggtaactcttcgtacggagcctcgggcggtttgcatggcgtgggctcgtcagtg
gtgaacgcgttgagctcccgtcttgacgtggaagtggatcgtgacggcaagacgcatcat
atgtcattccatcagggtcatcctggtgtgtataccgatgctgatccggagcacccatct
ccggatgcgccattcaaacgcacgcgtaaaaaccgtccgactgagcttgaaatcattggc
aaggtcagtccgaagaccacgggaactcgcattcgttattgggctgatccggagattttc
aacgacaccgcggaattcagctacgagcagctgattgatcgcgtcaggcagaccagcttc
ctggtgccgggtttgaaaatcactgttatcgatgagaatattccggaaaccggcgatgaa
tcagtcgacgaaatgctggaagtcgacgatattgcaaatgctgcaggtgatgaaccgcag
gaaattgccgaaagcgatgaatctgaacatgacgctgccgggcacgaggaagctgcggag
cagatcgaggaagccgatgttgcggcacaacctcagggatcgaagtatacccactcccgt
atcgaggaattctgccataccggcggtgtgaaggatttcgtggattacctgtccaaaggc
gaagcggtttccgctatttggcgtatcactggcgaagacacctatgttgaggaaacccaa
gccgttggcgatggcggtgaactgcacgcgcagaaggttacgagaaattgtgccgtcgat
atcgccatgcggtggaccaacggatacgacaccaccatgcgcagcttcgtcaatgtggtg
gaaaccccgggcggtggaacccatgtggatggctatctgttgggcctgaccaagcagatt
cgcaaagccatcgaagacaatgcacgtaagctcaaagtgaatctcaaagattccaacatg
aaagtcgaacgtgacgatattctggcaggtctggttgccgtcgtcactgtgcgtatcgcc
gaaccacagttccaaggtcagaccaaggatgtgctcggcaccgcgcaggtcaagccgatc
gtcagcaaaatgaccgacaggcagttcggcgagatgatcaccggctccaaacgtggctat
aaggaacagtccggccgcgtgcttgaaaagatcgtcggcgaaatgcacgcccgcatccaa
gcacgtaagaccaaagaggtgacgcgacgcaagaacgcgctcgaatcggcatccatgcca
ccgaaactgtctgattgccagccaggcaatgacgatgtggccgaactgttcatcgtggag
ggcgattccgcacttggcaccgccaaagccgcgcgtaattccggtttccaggcgttgctg
ccgattcgaggtaaaattctcaacgtgcagaaggcgtcgttgtcgcagatgctgtcgaac
aaggaatgcgcggcgatcattcaggtggtcggcgctggctccggagcgagcttcgacatc
gagcaagcacgttacaacaaggtcattatgatgaccgatgcagatgtcgatggcgcgcac
atccgcattctgctgctcaccttgttctactgttacatgcggccgctcatcgagtacggt
cacgtgtatgcggccgtgcctccgctgcaccgcatcgccttgaccggagctcacaagggg
gagtatatctacacgtattccgacgatgagctggccggcaaattggctgatcttgataag
aagcacatcagctataacgaggacattcagcgctataagggtctgggtgaaatggacgcc
gaccagctggccgacaccactatggatccacgcacacgtatgctgcgtcgtatccgtatg
gaagacgccgaacaggccagtcagattttcagtctgctgatgggcgatgacgtgccgccg
cgtaaagcgttcatcgttgagaatgccgacgatttcgaccgttcgaagatcgatacctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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