KEGG   Burkholderia pseudomallei MSHR520: BBX_2358
Entry
BBX_2358          CDS       T03163                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bpsd  Burkholderia pseudomallei MSHR520
Pathway
bpsd02024  Quorum sensing
bpsd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBX_2358 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BBX_2358 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpsd03019]
    BBX_2358 (hfq)
   03036 Chromosome and associated proteins [BR:bpsd03036]
    BBX_2358 (hfq)
Messenger RNA biogenesis [BR:bpsd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BBX_2358 (hfq)
Chromosome and associated proteins [BR:bpsd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BBX_2358 (hfq)
SSDB
Motif
Pfam: Hfq Mucin-like LSM
Other DBs
NCBI-ProteinID: AHK65660
Position
1:2645277..2645927
AA seq 216 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
RESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
QEGASTPSGTQERNGNGNGPVIVTRRRRSLGPTDGQ
NT seq 651 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgactgacgggttgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcccgtccgggcggacgcggcccgcgc
gcgggcggcgcccacggcggcggcggacgccccggcggacgcgaaggcggcggtcatggc
ccgtacggctcgcacggcggctcgcgcgaaccccgcggcgacggcggcggctatggcgct
cgcgaatcgcgcggcgacggcggttatggctcccgcgaatcgcgcggtgacggcggctac
ggttcccgcgaaccgcgcggcgacggcggctacggctcccgcgaaccgcgtggcgacggc
ggctatggcgcgcgcgagccgcgtgaaccgcgcgagccccgcgagtcttacggcgcgccg
caagaaggcgcatcgacgccgtccggcacgcaggaacgcaacggcaacggcaacggcccg
gtgatcgtcacgcgccgtcgccgttcgctcggcccgaccgacggccaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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