KEGG T03498: X996

Burkholderia pseudomallei A79A: X996_1709

Entry

X996_1709         CDS       T03498

Name

(GenBank) ribonuclease, Rne/Rng family domain protein

K08300

ribonuclease E [EC:3.1.26.12]

Organism

bpso Burkholderia pseudomallei A79A

Pathway

bpso03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bpso00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    X996_1709
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpso03019]
    X996_1709
   03009 Ribosome biogenesis [BR:bpso03009]
    X996_1709
Enzymes [BR:bpso01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     X996_1709
Messenger RNA biogenesis [BR:bpso03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     X996_1709
Ribosome biogenesis [BR:bpso03009]
Prokaryotic type
  rRNA processing factors
   X996_1709

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1

Other DBs

NCBI-ProteinID:

AIV95962

Position

1:complement(1902511..1905774)

AA seq 1087 aa
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAPEAAAPVAAAPASGGGFMKWLKGLFGAQPAAVPAPAPAAQETAARPAR
ERAERGERGEKAERGERGGDRNRHRRGGAAQQAGGRDQAAAGGGRAQAPRAERDGKETRE
PREGREARGGRDNREGREARETREPREPREQREPREAREQREARERAETVDAAEAPRGER
RERGERRKPAPHVATLETVNRGESAHAETAEKPLYAPGAEAGVDADSNARDGEERRRRRR
GRRGGRREREDEVAGAVQAAEGSEGVTAEAEALEHAEHAQQRVAPVANQAPEHAAQAGAG
VAAAAAATVAAEAIAHVESGAKVEPQPAAEASAGDTEQAEAVPARSIEAPAQAASTGQAE
AVQAAPAAPAHVTPATADVAREPAAPAETTPAEIPPAEAAPAEAPAAEASEVAASAVASA
PAPAAEPAPAAEPAPAADRTAGPSRRPASAAPAEADAAREPAAVAEPHVPAAAATPTPAS
VATTPGASLDTALAAAGLVWVNTDTDKLRAAQAAAAQIVQPVRVPRERKPLPPVDATPMQ
QVETTHR

NT seq 3264 nt +upstreamnt +downstreamnt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgatatcgatatcgaaaccgccggccgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaattac
ggcgaagaccgccacggcttcctgccgttcaaggaggtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgcttaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgagacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgagcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccacgatcag
gcgcgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtgcccctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcccgccagttacgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaaacacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtaacggccttcctgctcaacgagaagcgccaggaaatcaac
aagatcgaatcgcgcttcaaggtcggcgtcgtgctgattccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaaccaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgg
ccggcgccgagccccgcgccgcagcgccagagcgcgccggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggtttcatgaaatggctgaagggcctgttcggcgcgcag
ccggctgcggtgcccgcaccggcgcccgccgcgcaggaaacggctgcgcgtccggcgcgc
gagcgcgcggagcgtggtgagcgcggcgagaaggccgagcgcggcgaacgcggcggcgat
cgcaaccgccaccgccgcggcggcgccgcgcagcaggcgggtggacgcgaccaggcggcg
gcaggcggcggccgcgctcaggcgccgcgcgccgagcgcgacggcaaggaaactcgcgag
ccgcgcgaaggccgcgaagcacgcggcggccgggacaaccgggaaggccgcgaggcgcgc
gaaacccgcgagccgcgcgagccccgtgaacaacgcgaaccgcgcgaggcacgcgagcag
cgcgaagcgcgcgagcgcgccgaaacggtcgacgccgcggaagccccgcgcggcgagcgc
cgtgaacgcggcgagcgccgtaagccggccccgcatgtcgcgacgctcgaaacggtgaat
cgcggcgaaagcgcacatgcggaaaccgccgaaaagccgctgtacgcgcctggcgcggaa
gccggcgtcgacgcggattcgaacgcacgcgacggcgaagaacgccgccgccgccgccgt
ggccgccgtggcggccgccgcgagcgtgaagacgaagtcgcgggcgccgtgcaggcggcg
gaaggcagcgaaggcgtgacggccgaggccgaagcgctcgagcacgccgagcacgcgcaa
caacgcgtcgcgccggtagcgaaccaagcgcccgagcatgccgcgcaagcgggtgcgggc
gtcgcggcggcagccgccgcgaccgtcgcagccgaggcgattgcgcatgtcgagagcggc
gcgaaggtcgagccgcaaccggcggccgaggcatccgctggcgatacggaacaggccgag
gcggtgcccgcgcggtccatcgaagcaccggcgcaagcggcttcgacgggtcaagcggaa
gccgtgcaagccgcaccggccgcaccggcacacgtgacgccggccacggccgacgtcgcg
cgcgagccggccgcgcctgccgaaactacgcctgctgaaatcccgcctgccgaagccgcg
cccgccgaagcaccggccgcggaagcgtccgaagtggccgcgagcgcggtcgcttcggcc
ccggccccggccgcggagcccgcgccggccgcggagcccgcgccggccgccgaccgcacg
gccggcccgtctcggcgccccgcctcggccgcgccggccgaagcggacgccgcgcgcgag
ccggccgccgtcgccgagccgcacgtgccggcggccgccgcgacccctaccccggcttcg
gtggcgaccacgccgggcgcgagcctcgatacggcgctcgcggccgccggccttgtctgg
gtcaataccgacacggacaagctgcgcgccgcacaggccgccgccgcgcaaatcgtgcag
cccgtgcgcgtgccgcgcgaacgcaagccgctgccgcccgtcgacgcgacgccgatgcag
caggtcgagacgacgcaccgctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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