KEGG   Bacillus pumilus SAFR-032: BPUM_1557
Entry
BPUM_1557         CDS       T00599                                 
Symbol
polC
Name
(GenBank) DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
bpu  Bacillus pumilus SAFR-032
Pathway
bpu03030  DNA replication
bpu03430  Mismatch repair
bpu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bpu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BPUM_1557 (polC)
   03430 Mismatch repair
    BPUM_1557 (polC)
   03440 Homologous recombination
    BPUM_1557 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpu03032]
    BPUM_1557 (polC)
   03400 DNA repair and recombination proteins [BR:bpu03400]
    BPUM_1557 (polC)
Enzymes [BR:bpu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BPUM_1557 (polC)
DNA replication proteins [BR:bpu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BPUM_1557 (polC)
DNA repair and recombination proteins [BR:bpu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BPUM_1557 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_a_NII DNA_pol3_finger DNA_pol3_a_NI HHH_6 tRNA_anti-codon HHH_3 DEDDh_C Rv2179c-like DNA_pol_A_exo1 RNase_H_2 Zn-ribbon_8
Other DBs
NCBI-ProteinID: ABV62239
UniProt: A8FDC2
Position
1607633..1611946
AA seq 1437 aa
MDEQLPITRRQFHILLNQIQMTDDDLSRYFEEGEIVKLTVHKLAKTWHFLFKFKALLPYK
VYAMFLSRLTNAFSHIAQVTCTIEVNDPSISEELVQSYWSHCVEELQGISPPIISLLQQQ
KPSLSGHKIIIKTKSETEALAIKKKYSPMLQAAFKQVGFPELQFDTEIFVSDQEIQKFRE
QKLAEDQERAMQALTEMEKKESEEQEEGPSGPLMIGYQIKDNEEIRTLDSIMDEERRITV
QGYVFDAETRELKSGRTLCIFKITDYTNSILIKMFAREKEDAQLMKSLKKGMWVKARGSI
QNDTFVRDLVMIANDVNEMKPQLKEDTAPEGEKRVELHLHSPMSQMDAVTGIGRLVEQAK
KWGHEAIALTDHAVVQSFPDAYAASRKHDIKMMYGVEINLVDDGVPIAYNPEHRLLEDAT
YVVFDVETTGLSAVYDTIIELAAVKIKGGEIIDRFEAFANPHHPLSATTIELTGITDDMV
RDAPDVVDVVRDFKEWIGQDILVAHNASFDMGFLNTAYKRLLKTDKASNPVIDTLELGRF
LYPEFKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLMLKMLKDAAEKDIAYHDQLNENM
GQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIHYFYRVPRIPRSQLEKYREGLIIG
SACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQHLLQLELVRDERALKEIITNI
VKLGEKLNKPVVATGNVHYLHPEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEA
FSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYTPKIEGADEEIREMSYQMARSIYGD
DLPKIVEDRIEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSLVATLTEI
TEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPDKDCPECGTPYKKDGHDIPFETFLGFK
GDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYRAGTIGTVAEKTAYGYVKGYAGDHNLH
MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSDWKTTHFDF
HSIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTEPLGVTEEQIG
CKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIHNKTCELS
EVIGCRDDIMVYLIYQGLEPSLAFKIMESVRKGKGLPPEWEEEMKNNNVPNWYIDSCKKI
KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAYFTVRADDFDIETMTKGSNAIRAVMDD
INSKGLDASPKEKNLLTVLELALEMCERGYHFKKVDLYRSSATEFIIDGDGLIPPFNSIP
GLGTNVALNIVRARQDGEFLSKEDLQKRGKVSKTILEYLDRQGCLEALPDQNQLSLF
NT seq 4314 nt   +upstreamnt  +downstreamnt
ttggatgaacaattaccgatcacacggcggcaatttcatatattactcaatcagattcaa
atgacagatgatgacctcagtcgttactttgaagaaggagaaatcgtcaaattgacggtg
cataagttggcgaaaacgtggcatttcctttttaaatttaaggcgcttctgccttacaaa
gtatatgcaatgtttctcagcaggctgacaaatgcattttctcatattgcacaagttact
tgtacgattgaagtcaatgatccgagcatctcggaagagctcgttcaatcgtattggtca
cattgtgtggaagagcttcaaggaatttctcctccaattatcagcttgcttcagcagcaa
aaaccatcgctgtctggacataaaatcatcatcaaaacgaaaagcgaaacagaagctttg
gccatcaagaagaagtacagtccaatgctacaggctgcttttaaacaagtaggctttcca
gaattgcaatttgatacagaaatttttgtatcagatcaagagattcagaagtttagagaa
caaaagcttgctgaagatcaagaaagagcaatgcaagccctcactgagatggagaagaag
gaaagtgaggagcaggaggaaggtccgtctggccctctcatgattggctatcaaattaaa
gacaatgaagaaattcgtacgcttgatagtattatggacgaggaaagaagaattaccgtc
cagggctacgtattcgatgcagaaacacgtgagctgaaaagcggcagaacgctttgtatc
tttaaaattactgattatacaaacagtattttaatcaagatgtttgcaagagaaaaagaa
gatgcccagctgatgaaatcattgaaaaaaggcatgtgggtcaaagcaagaggaagcatt
caaaacgatacgtttgtgagagaccttgtcatgattgccaatgacgtcaatgaaatgaaa
cctcagttgaaagaggatacggcacctgagggtgaaaagcgtgtcgagcttcatttgcat
tccccaatgagccaaatggatgctgttactggcatcggcaggctggtggaacaagcaaaa
aaatggggacatgaagcaattgccctgacggatcatgcggttgtacaatccttcccagat
gcgtatgcagcaagtagaaagcatgacatcaaaatgatgtatggtgtggaaatcaacttg
gttgacgacggagtccctattgcctataatccagagcaccgtttgttagaggatgcaacg
tatgtcgtatttgacgtcgagacaactggactttcagctgtgtatgacacgatcattgag
ctggcagcagtaaaaataaaaggcggagaaatcattgaccgttttgaggcttttgcaaat
cctcatcacccattatcagcgacaacgatcgaattaacaggtatcacggatgatatggtc
agagatgcgccagatgtcgtcgatgtcgtacgggatttcaaagaatggattggacaagat
atccttgttgcgcacaatgcaagctttgatatgggctttttaaatacagcgtacaaacgc
ctgttaaaaacagataaagcgtcaaacccggtgattgatacacttgaacttggccgattc
ctatacccagaatttaagaatcaccggctgaacacactttgtaaaaagttcgatatagaa
ctgacgcagcatcaccgcgccatttacgatgcagaggcgacaggctacctcatgctaaaa
atgttaaaagatgcggctgaaaaagatattgcttatcacgatcaattaaatgaaaacatg
ggtcagtctaatgcgtaccagcgctcacgtccttaccatgccattctgatcgcacaaaat
gagacgggactgaaaaatttattcaagcttgtttctctttctcatattcattatttctac
cgagtgccgcgcattccgcgctcacagcttgagaaatatcgagaaggtttaattatcggg
tctgcctgtgataagggtgaagtgtttgaaggaatgatgcaaaaatcacctgatgaggta
gaagacattgccgcattttacgactatttagaagttcatccgccagaagtgtatcagcat
ctgctgcagctggagcttgttcgagatgaacgtgcgttaaaagaaatcatcacaaacatt
gtgaagcttggtgaaaagctgaataaaccagtcgtggcaacagggaatgtgcattatctg
catccagaagacaaaatttatcgtaaaatcttaatttcatcgcaaggtggagcgaatccg
ctgaatcgtcatgaactgccaaaagttcattttagaacgacagatgaaatgcttgaagca
ttctcctttctaggagaggaaaaagcgaaagagatcgtcgtgacgaatacgaaaaaagtt
tctgagatggtcgaaagcattaaaccaatcaaagatgatctgtacacaccaaaaattgaa
ggtgcagatgaagaaatacgggaaatgagttatcaaatggcgcgcagcatctacggagat
gacttgccgaaaatcgtagaagaccgtattgagaaagaattaaaaagtattatcggtcat
ggattcgccgttatttacttaatttctcataagcttgtaaagaaatcacttgatgacgga
tatcttgttggttcaaggggatctgtcggctcatcacttgttgccactttaacagagatt
accgaagtgaacccgcttgcgccgcattatgtatgtccaagctgtaagcattccgaattc
tttaacgacggatctgttggttcaggctttgaccttcctgacaaagactgcccagaatgt
ggcacgccgtacaaaaaagacggacatgatattccgtttgaaacgttcttaggttttaaa
ggagacaaagtccctgatatcgacttgaacttttcaggtgaatatcagccgatagctcat
aattatacaaaagagctgtttggtgaagagtacgtataccgagcaggtacgattggtact
gttgcagaaaaaacagcatatggttacgtgaaaggctatgctggagatcataatcttcat
atgaggggcgcagaaatcgaccggcttgtacaaggctgtacaggggtaaaacggacaacg
ggtcagcatccaggcggtatcattgtagtgccggattatatggacatttacgatttttca
cctattcaatttccagcagatgcgacaggttctgattggaaaacgacgcattttgatttc
cactccatccatgacaacttgctcaaacttgatatactagggcacgatgatcctacggtt
attcgtatgcttcaggatttaagcggaattgatccaaaaacgattccaacagatgatcct
gaagtgatgaagattttccaaggaacagagcctcttggtgtaacagaagagcaaattggt
tgtaaaacaggtacactcggtattccggagtttgggacaaggtttgttcggcaaatgctt
gaggatacaaaaccaacaaccttctcagagctcgttcagatctctggattatcacacggg
acggatgtatggctcgggaacgcgcaagagctcatccacaataaaacgtgtgaactaagt
gaagtgattgggtgccgtgacgatattatggtctatctcatctatcagggtttagagccg
tcacttgcctttaaaatcatggagtctgttcgtaaaggaaaaggacttcctcctgaatgg
gaagaagaaatgaagaataataatgtaccgaactggtatattgattcttgtaaaaagatc
aaatacatgttccctaaggcccacgcagctgcttacgtattaatggctgtacgtattgct
tactttaaggtgcatcatgcacttttatactatgcggcttactttaccgttcgtgcagat
gactttgatattgaaacaatgacaaaaggatcgaatgcgattcgagcagtcatggacgat
attaactcaaaaggtttagatgcatcaccgaaagaaaaaaacctattaactgtactagag
cttgctcttgaaatgtgtgaaagaggctaccatttcaaaaaagtggacctctaccgatca
agtgcaacagagtttatcattgatggtgacggattgattccgccgttcaactcaatccct
ggactcggaacgaacgttgcgttaaatattgtacgcgcacgtcaagatggggaattcctt
tcaaaagaagatttacaaaaacgcggaaaagtgtcgaaaacgatcctagaatatttagat
cgtcaaggctgcttagaagcacttcctgatcaaaaccagctttctttgttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (27)   

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