KEGG   Bacillus pumilus SH-B9: UP12_08580
Entry
UP12_08580        CDS       T04776                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpus  Bacillus pumilus SH-B9
Pathway
bpus03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    UP12_08580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpus03400]
    UP12_08580
Enzymes [BR:bpus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UP12_08580
DNA repair and recombination proteins [BR:bpus03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     UP12_08580
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_primase_S DNA_ligase_A_C
Other DBs
NCBI-ProteinID: AMM97398
Position
complement(1748191..1750056)
AA seq 621 aa
MKPMRLTAAHDVPTGADWVYELKYDGFRVILTWEQNKIHLESRAGKRLNEQFPEMIEQCE
QLRDQFAPFLPLTFDGELVFLLDEQQSDFARVQQRGRLKNKEAIKQQAERFPCHLTVFDL
LRCKGQSLIDLPLMERKKQVQQVFKAAKLPPSVQLEHPSLLQLIHTDTNPEHMKKLMTTY
LAEGLVAKKGTSKWHENTRSKEWLKVKNWRYISVIVTRFDKENGYFQGCIYQDHHLTEVV
QFKHGFSKEEEQTLRMLFQTKGNQIGTSGYEIPPSIVASIACISFDGSALREPRFSSFLL
DTDPAACTFQQMLKQLYPLPAVIDVTHPEKSIVPSLHLNKADYLLYLRQAAPYLLPFLRE
RRLTLIRFPHGAGDEFFYQKSTPDYAPDYVLTDQADDISYTVCNDPQTLLWLGNQLAMEF
HIPFETRDTNRPIEIVFDLDPPSVNEFHLAIEAAKRIKTLLDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEETRTFTAFICQFLCEQAPELFTLERLKKKRGNRLYLDYIQHDAGKTII
APYSPRGNELGLVATPLEWDELHQDGLHPSLFTMPAVIERLKEKGDPFRRMRHLVNDDTF
RQVLHRLEDIIPAHKMDIRGH
NT seq 1866 nt   +upstreamnt  +downstreamnt
atgaaacctatgcgattaacggctgcacatgatgttcctaccggtgcagactgggtgtat
gaattaaaatatgacggctttcgagtcattctgacgtgggagcaaaacaagattcattta
gaaagcagagccggaaaacgattaaacgaacagtttcctgaaatgattgaacagtgcgaa
caattaagggatcagtttgctccttttttacctctgacgtttgatggagaattggtcttt
ttactggatgaacagcaaagcgattttgcgagggttcagcaaagaggcagattaaaaaac
aaagaggcgattaagcaacaggctgagcggtttccatgtcatttgaccgtatttgatcta
ttaagatgcaaagggcaatctctaattgatttgccgttgatggaaaggaaaaaacaggta
cagcaagttttcaaagcagcaaaacttccgccatctgttcagcttgagcacccttccctt
cttcaactcattcatacagacacaaatcctgaacatatgaaaaagctgatgacgacgtat
ttagcagaaggactcgttgcgaaaaaagggacgagtaaatggcacgagaatacacggtca
aaagaatggctgaaagtcaaaaactggcgatatatctctgtcattgtgactcgttttgat
aaagaaaatggctacttccaaggctgtatttatcaagatcatcatctcaccgaggttgtc
caattcaagcatggattttctaaagaagaagaacaaacgctgcgtatgctttttcaaaca
aaaggcaatcaaatagggacatcaggatatgaaatcccaccttctatcgtcgcgagcatt
gcttgtatctcctttgatgggtccgccttaagagagccgcgtttttcttcctttttactt
gatactgacccagcggcgtgtacgtttcagcaaatgctcaaacagctgtatccgctccct
gctgtgattgacgtcactcatcctgaaaaatcgattgtgccgtctcttcatctgaacaag
gcagattacttgctttatttaagacaagccgctccctacctcttgccctttttacgtgaa
agacggctgactttaattcggtttcctcatggcgccggggatgaatttttttatcaaaaa
tcgacacctgattatgcgccagattatgtgttgaccgatcaagctgatgatatttcatac
actgtctgtaatgaccctcagacgcttctttggctcggtaaccagcttgcaatggaattt
catattccttttgaaacaagagatacaaatcggccgatcgaaatcgtctttgatttagac
ccgccatctgttaacgagtttcatctagccatagaagctgctaagcgaatcaaaacgctt
ttagacggtctctttcttacagcctttattaaaacaagcggtggtaaaggactgcaagtt
tatattccattaaagaaaaatgccttcacatacgaagaaacgagaacatttaccgcgttt
atatgccaatttttatgtgaacaagcacctgagctatttactctggaacgtcttaagaaa
aaacgcggcaatcgcttgtatttagactatattcagcacgatgctggaaaaacaatcatt
gcgccctattcaccaagaggaaatgagcttgggcttgtagcgacaccgcttgaatgggac
gaactccatcaagatggacttcacccttctttgtttaccatgccagctgtgatagagcgt
ctaaaggaaaaaggcgatccattccgccgcatgagacaccttgtaaatgatgacactttc
agacaagttttgcaccggcttgaggacattatcccggcacataagatggacatacgcggt
cattaa

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