KEGG   Paraburkholderia phytofirmans PsJN: Bphyt_3606
Entry
Bphyt_3606        CDS       T00765                                 
Name
(GenBank) diaminopimelate decarboxylase
  KO
K01586  diaminopimelate decarboxylase [EC:4.1.1.20]
Organism
bpy  Paraburkholderia phytofirmans PsJN
Pathway
bpy00300  Lysine biosynthesis
bpy00470  D-Amino acid metabolism
bpy01100  Metabolic pathways
bpy01110  Biosynthesis of secondary metabolites
bpy01120  Microbial metabolism in diverse environments
bpy01230  Biosynthesis of amino acids
Module
bpy_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:bpy00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    Bphyt_3606
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    Bphyt_3606
Enzymes [BR:bpy01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.20  diaminopimelate decarboxylase
     Bphyt_3606
SSDB
Motif
Pfam: Orn_Arg_deC_N Orn_DAP_Arg_deC Ala_racemase_N S-methyl_trans SH3BP5
Other DBs
NCBI-ProteinID: ACD17996
UniProt: B2T713
Position
1:4048298..4049560
AA seq 420 aa
MIRSAFDYVDGVLHAEGVSAVSLAEQFGTPLYVYSRAALTEAWNAYAGACAGRRASVHVA
VKANSNLAVLNVFARLGAGFDIVSGGELARVLAAGGRAENTVFSGVGKHADEMRDALAAG
VKCFNVESIPELDRLNAVAAAMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDA
RATYQAAAAMANLEVVGIDCHIGSQITEVAPYLDAVDKVLELVEQIEQDGVKIRHIDVGG
GLGITYDDETPPEIGEFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGMLLTRVEFLKPG
AEKNFAIVDAAMTDLARPAMYEAYHAIDPVVKRDVPAHVYDVVGPVCESGDWLGRERLLS
VEPGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMVDGTQVHVVRAREEVKQLFAGETILPA
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgattcgatccgcatttgactacgtcgatggcgtgctgcacgccgaaggcgtgtccgcc
gtctccctcgccgagcagttcggcacgccgctgtacgtgtactcgcgcgccgcgctgacc
gaggcgtggaacgcttacgcaggcgcttgcgccggccgtcgcgcgagcgttcatgtggcc
gtgaaggccaatagcaatctcgcggtgttgaacgtgttcgcgcgcctcggcgccggcttc
gacatcgtgtcgggcggtgaactggcgcgcgtgctggccgctggcggcagagcggaaaac
accgtgttttccggcgtcggcaagcacgcggacgaaatgcgcgacgcactcgcggccggc
gtgaaatgcttcaacgtcgaatcgattcccgagctggaccgcctgaatgcggttgccgcg
gcaatgggcaagaaggcgcccgtctcgctgcgcgtgaatccggacgttgacgcgaagacg
catccgtatatttccacgggcttgaagtcgaacaagttcggcgtcgcgttcgaagacgcg
cgcgccacgtatcaggcggccgcggctatggcgaatctcgaggtggtcggcatcgactgc
catatcggctcgcagatcacagaagtcgcgccgtatctcgacgccgtcgacaaggttctg
gaactggtcgagcagatcgagcaggacggcgtgaagattcgtcacatcgacgtgggcggc
ggtctcggcatcacgtacgacgatgaaacgccgccggaaatcggcgagttcgtgcgcacc
gtgctcgatcgcatcgaagcgcgcggtcacggccaccgtgaagtgtatttcgagccgggc
cgttcgctggtcggcaacgccggcatgctgctcacacgcgtcgagtttctcaagccgggc
gcggaaaagaattttgctatcgtcgacgcagccatgaccgatctcgcccgcccggccatg
tacgaggcgtatcacgcgatcgatccggtcgtgaagcgcgacgtaccggctcacgtgtac
gacgtggtcggtccggtttgcgaaagtggcgactggcttggacgtgagcgtctgctgtct
gttgaaccgggcgatctgctcgcgattcgttcggccggcgcgtatggcttcgtgatgagc
tcgaactacaacacacgtccgcgcgcggctgaggtgatggtggatggtacacaggtgcac
gtggtgcgcgcacgcgaagaggtgaagcagctgtttgcgggcgaaaccattctgccggca
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (6)   
   KEGG MODULE (4)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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