KEGG   Burkholderia pseudomallei 1026b: BP1026B_I3450
Entry
BP1026B_I3450     CDS       T02049                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bpz  Burkholderia pseudomallei 1026b
Pathway
bpz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bpz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BP1026B_I3450 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpz03021]
    BP1026B_I3450 (rpoC)
   03400 DNA repair and recombination proteins [BR:bpz03400]
    BP1026B_I3450 (rpoC)
Enzymes [BR:bpz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BP1026B_I3450 (rpoC)
Transcription machinery [BR:bpz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BP1026B_I3450 (rpoC)
DNA repair and recombination proteins [BR:bpz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BP1026B_I3450 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl_2 Apocytochr_F_C DUF6744 PYNP_C Baculo_ME53
Other DBs
NCBI-ProteinID: AFI68029
UniProt: A0A0H3HP07
Position
1:complement(3817156..3821394)
AA seq 1412 aa
MKALLDLFKQVQQEEIFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGLSFTGVSEVIRAYENK
EVELASRVNVRITEMVRNEDTSEGAPQFVPKISLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPTQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVIDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAASDVVNPETQETLYEAGALLDETAVEDIERLGIDEVRVRTALTCETRYGLC
ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTASMRYVTNAKGEQIVISRSGEALITDDIGRERERHKIPYGATLLQLDGAAIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDANGDEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYDNILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKEQ
SDRERFDQIAAEEAFEFGTPSAPAEEPQHPAE
NT seq 4239 nt   +upstreamnt  +downstreamnt
atgaaagctttgctcgatctattcaagcaagtccaacaagaagaaatttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgctcgtggtcgttcggcgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggtttgttctgcgcgaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctcgcgaaggtgcgccgtgag
cgaatgggccacatcgagctcgcgtcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgatcgacccgggcatgacgccgctgaaggcgcgtcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggcgttccagcgttcgggcatcaagcccgactggatgatcctcgaa
gtgctgccggtgctgccgccggagctgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacgtcggatctgaacgacctgtaccgccgcgtgatcaaccggaacaaccgtctgaag
cgtctgctcgagctgaaggcgccggagatcatcgtgcgcaacgagaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggcgatgacgggtgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgcttccgtcag
aacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggcccgacg
ctgaagctgcaccagtgcggtttgccgaagctgatggcgctcgagctgttcaagccgttc
atcttcaacaagctcgaagtgatgggcgtcgcgacgaccatcaaggcggcgaagaaggag
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgatgctcaaccgtgcgccgacgctgcaccgtctcggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggcgaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctggggctgtactacgcgacccgcgaagcgatcaacggc
aagggcgaaggcctttcgttcaccggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaggtcgagctcgcgtcgcgcgtgaacgtgcggatcaccgaaatggtccgcaacgaggat
acgtccgaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctcatcaacaccgcgttccgcaagtgcggcctgcgc
gcgaccgtcgtgttcgccgatcagctgatgcagtcgggcttccgtctcgcgacgcgtgcc
ggcatctcgatctgcgtcgacgacatgctcgtgccgacgcagaaggaaacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgaccgagccggtgatcgatcgcgacggcaacgagacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggttcggcggtg
cagattcgtcagctggccggcatgcgcggcctgatggcgaagccggacggctcgattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggcgcacgtaagggcttggcggatacggcactgaagaccgcgaactcgggctac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctcgtcgtcgtcgaggacgattgcggc
acgtcgaacggcgtcgcgatgaaggcgctcgtcgaaggcggtgaagtcgtcgaagcgctg
cgcgaccgtattctcggccgcgtcgcggcatcggacgtcgtcaacccggaaacgcaggaa
accctgtacgaagccggcgcgctgctcgacgaaaccgcggtggaggacatcgagcgcctc
ggtatcgacgaagtgcgcgtgcgcacggcgcttacctgcgagacgcgctacggtctgtgc
gcgtcgtgctacggccgcgatctcggccgcggctcgctcgtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgagccgggcacgcagctgacgatgcgtacgttc
cacatcggcggcgcggcgtcgcgggcggcggtggcttcgtcggtcgaggcgaagagcaac
ggcacggtgcgcttcacggcgtcgatgcgctacgtgacgaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgctcatcaccgacgatatcggccgcgagcgcgaacgt
cacaagatcccgtacggcgcgacgctgctgcagctcgacggtgcggcgatcaaggccggc
acgcaactcgcgacgtgggatccgctcacgcgcccgatcatcaccgagtacggcggtacg
gtgaagttcgagaacgtcgaggaaggcgtgacggtcgccaagcagatcgacgacgtgacg
ggcctgtcgacgctcgtcgtgatcgacgtgaagcgccgcggttcgcaggcggcgaagagc
gtgcgtccgcaggtgaagctgctcgacgcgaacggcgacgaagtgaagatcccgggcacg
gagcacgcggtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacccgcgac
attaccggcggtctgccgcgcgtggccgagctgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcacgggcacggtgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggatctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggtgctcgtccacgacggtcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcaggggatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgccgtgtgcagatcgtcgacaatggcgatacgcgcttc
attccgggcgagcaggtcgagcgttcggacatgctggacgagaacgaccgcatgatcgcc
gaagacaagcgtccggcgacgtacgacaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgttgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaacgtgatcgtcggc
cgtctgatcccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggagcaa
tccgatcgcgagcgcttcgaccagatcgcagcggaagaagcgttcgagttcggcacgccg
agcgcgcccgccgaagagccgcagcacccggcggagtaa

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