KEGG   Bartonella quintana RM-11: RM11_0674
Entry
RM11_0674         CDS       T02294                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bqr  Bartonella quintana RM-11
Pathway
bqr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bqr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RM11_0674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bqr03021]
    RM11_0674
   03400 DNA repair and recombination proteins [BR:bqr03400]
    RM11_0674
Enzymes [BR:bqr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RM11_0674
Transcription machinery [BR:bqr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RM11_0674
DNA repair and recombination proteins [BR:bqr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RM11_0674
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2
Other DBs
NCBI-GeneID: 13563547
NCBI-ProteinID: AFR26401
Position
complement(843705..847898)
AA seq 1397 aa
MNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARIFGP
IKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLPGRI
STLLDLTLKDIERVLYFENYIVTESGLTSLKLHQLLSEEEYMLAIDEFGEDQFTAMIGAE
AIYELLAGMELEKIANDLRVELSETTSELKQKKLIKRLKIVENFLESGNRPEWMIMKTIP
VIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRMVQEAV
DALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKL
HQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIREHPVLL
NRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVL
MMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDMGELHHALENKVVT
LHTKIKGRVKNIDKDGKEVAKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKNISKMI
DQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKLRLVAETEALAKEYE
QQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDPKTGRQRPMNSIYMMSHS
GARGSANQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLADTAL
KTANSGYLTRRLVDVAQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRTALVDI
LHPVSGEVIVEGGVMIEETDVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDLARGTP
VNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASYEGTVEIRNRNVVHNS
EGHLVVMGRNMVILIKDGSGKERVVHRISYGARIFVDDGDVVKCGQRIAEWDPYTRPILT
EVEGYVGFEDMIDGLSVTETADESTGITKRLVIDWRANPRGADLKPAIIIHADKKGEAIA
KYKGGEARYMMSVDTILSVEPGAHVKAGDVIARLPMESAKTKDITGGLPRVAELFEARRP
KDHAIIAEVSGTIQFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQIEKGDY
ILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITES
GDSGYIPGDHVDRIELDEINDNLIAEGKRPASGNPILLGITKASLQTPSFISAASFQETT
RVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIAAVRDNLIVDERRKSSDS
QVAKIMLTNMTTGATAE
NT seq 4194 nt   +upstreamnt  +downstreamnt
atgaatcttttcaatcctcaggcgccagcgcagacatttgactctattcgtatttcaatt
gcgagccctgagaagattttgtcttggtcgtatggtgagatcaagaagcctgagactatt
aattataggacttttaagccagagcgtgatggtcttttctgtgcacgtatatttggcccg
attaaagactacgaatgtctatgcggtaaatataaacgcatgaaatataagggcattatc
tgtgaaaaatgtggtgtagaggttactctttcgcgtgtacgtcgtgagcgtatgggacac
attgaacttgcagcacctgtcgctcatatttggttccttaaatcattaccaggtcgcatt
tccacacttttagatttgactttgaaagatattgaacgggttctctattttgagaattat
atcgtaacggaatcagggttgacatcccttaagcttcatcagcttctttctgaagaagag
tatatgcttgctattgatgagttcggggaagatcagtttacagctatgattggtgctgag
gctatttacgaacttctagctggtatggagttggagaaaattgccaatgatttgcgtgtc
gaattgtctgagacaacttcggaattaaagcagaaaaaactgattaaacggcttaagatt
gttgagaatttccttgaatctggcaatagaccggagtggatgattatgaaaacgattccg
gttattccaccggatttacgtccattggttccacttgatggtggtcgttttgctacgtcc
gatttgaacgatctttatcggcgggttataaatcgtaataaccggttgaaacgactgatt
gagttgcgtgctcctgggattattgttcgcaatgaaaaacgtatggtgcaagaagctgtt
gatgcattatttgataacggccggcgtgggcgtgtgattactggagccaataagcgtccg
ctaaaatctctttcagacatgctaaagggtaagcaagggcgtttccgtcaaaacttactt
ggaaaacgtgttgattactcagggcgttctgttattgtgacaggtcctgaattaaaatta
catcagtgtggtcttcccaaaaaaatggctctcgaattatttaagccatttatttatgca
cggcttgatgcgaagggatattcatcaactgtaaaacaggcaaaaaagcttgttgagaaa
gagcatccagaagtttgggatatcttggatgaggttattcgtgaacatcctgttttgctg
aatcgtgcgccgacattgcaccgtttggggattcaagcctttgagcctattttgattgag
ggaaaagctatacagcttcatccattggtgtgtactgcttttaatgcggattttgatggt
gatcagatggcggttcacgttccgctttctcttgaagcacagcttgaagcgcgtgtttta
atgatgtcgaccaataatattcttcatccagccaatggtgcgccaatcattgttccgtca
caggatatggttcttggtctttactatctttcgattgtttctgaaaaagaaccaggtgag
gggatggctttttctgatatgggtgagctccatcatgccctggaaaataaggttgtaact
cttcacacgaaaatcaaaggccgtgttaaaaatatcgataaggacggaaaagaagttgct
aaactttatgatacaacacctggtcgtttgattattggtgagcttttaccaaaaaacccg
aatatctcctttgatattgttaatcaagaaatgactaaaaagaacatttctaaaatgatt
gatcaggtttatcgacactgtgggcaaaaagagacggttattttctgtgaccgtattatg
cagcttggcttttctcatgcttgtcgtgcgggaatttcatttggtaaggatgatatggtt
atccctgatagcaagttacgtttggttgcagaaacggaagctttggctaaagagtatgaa
cagcaatataatgatggtctgattacacaaggtgaaaaatataacaaagttgtagatgct
tgggggaaatgtacggatcgcgttgcagatgaaatgatgaaacgtattcaggctgtcgaa
tttgatcctaaaacaggtcgtcagcggccaatgaattcgatctatatgatgtcgcattcc
ggtgcgcgtggttctgctaaccagatgaaacagttggctggtatgcgtgggttaatggca
aaaccatcaggtgaaattattgaaacaccaatcatttcaaactttaaggaaggcctaact
gttaatgagtactttaactccactcatggtgcacgtaaaggtcttgctgatactgcatta
aaaactgccaactctggttatctaacacggcgtcttgttgatgttgcacaggatgctatt
atttcagcagttgattgtggtactgcaaagggtcttaccatgcagccaattgttgatgca
ggacaaattgttgcgtctcttgggcaacgaattcttggtcgcacagcgcttgttgatatt
ctgcatccagtttctggagaggttattgttgaaggtggtgtgatgattgaggagactgat
gttgctaaaattgaagaagccggaatccagtctgttcaaatccgctctgctttgacatgt
gaaacgcgccttggtgtttgtgccaaatgctatggtcgtgatttggcgcgtgggacaccg
gttaatcagggtgaggccgttggtgttattgccgctcagtcaattggtgaaccaggaact
cagcttactatgcgtactttccacttggggggaacggcgcaggttgtggattcgtctcat
ttagaagcatcttatgaaggtacagtagagattcgtaatcgcaatgtggttcataattct
gaaggccatttggtggttatgggacgtaatatggttatccttatcaaggatggatccgga
aaagagcgggttgtgcatcgtattagctatggtgcgcgtatttttgttgatgatggtgat
gttgttaaatgtggtcaacgtattgcagaatgggatccctatacgcgtccaattcttact
gaagttgaggggtatgtaggttttgaagacatgattgatggtttatcagtgactgaaacg
gctgatgaatctacgggtattacgaagcgtttagtgattgattggcgtgctaatccacgt
ggtgctgatctaaaaccagccattatcatccatgcagacaagaaaggtgaagccattgcc
aaatataagggaggtgaagcccgttatatgatgtcagtggatactattctttctgttgag
cctggtgcccatgttaaggcaggtgatgttattgctcgcttgccaatggaaagtgctaaa
acaaaagatattacaggtggtcttccacgtgtggctgagctttttgaagcgcggcgtccg
aaagatcatgctattattgccgaagtcagtggtacaattcaatttggtcgtggttataaa
aataagcgtcgtattatcattgaaccaaatgatgaaactcttgaaccagtagaatatttg
attccaaagggcaagttgtttcacttccaagaaggcgaccaaattgaaaaaggggattat
atccttgatggtaatccagctcctcatgatatcttggcgattaagggtgttgaagctttg
gcatcttatcttgttaatgaaattcaggaagtttatcgtttgcagggcgttttaattaat
gacaagcacattgaagtgattgttcgtcaaatgttgcaaaaagttgaaattactgaatct
ggagattctggttatattccaggtgatcatgttgaccgtattgaattagatgaaatcaat
gataatttaattgccgaagggaaaagacctgcttctggtaatcctatcctgcttgggatt
acaaaagcatctcttcaaacaccatcctttatttcagcagcatcgtttcaggaaacaact
cgagtgcttactgaagcagcagtttccggaaagattgatactttgcaaggtcttaaggag
aatgttattgttggtcgtcttattcctgcgggtacaggtggtacgattgctcaaattcgt
cgtattgctgcagttcgtgacaatttgatcgttgatgaacggcgcaaatctagtgatagc
caagtggctaagattatgttaacaaatatgacaaccggagcaactgctgagtaa

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