KEGG   Bacillus amyloliquefaciens Y2: MUS_2008Help
Entry
MUS_2008          CDS       T02108                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bqy  Bacillus amyloliquefaciens Y2
Pathway
bqy03030  DNA replication
bqy03410  Base excision repair
bqy03420  Nucleotide excision repair
bqy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bqy00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    MUS_2008 (ligB)
   03410 Base excision repair
    MUS_2008 (ligB)
   03420 Nucleotide excision repair
    MUS_2008 (ligB)
   03430 Mismatch repair
    MUS_2008 (ligB)
Enzymes [BR:bqy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MUS_2008 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MUS_2008 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MUS_2008 (ligB)
DNA replication proteins [BR:bqy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MUS_2008 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MUS_2008 (ligB)
DNA repair and recombination proteins [BR:bqy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MUS_2008 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     MUS_2008 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     MUS_2008 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AFJ61975
UniProt: I2C5Q1
Position
complement(1949072..1949869)
Genome map
AA seq 265 aa AA seqDB search
MLLHSIKEPFDDDDYITELKFDGIRLILSKFNDQIKLYTRHNNEVTSKFPELLDLDIPNG
TVLDGEIIVAAPGGAPDFEAVMERFMSKKSAHKVVYCVFDVVYIDGHSVANKPLTERKSI
LLDLNLDHDNVFVIEGLQGNGLAYFNLAKEKHLEGIVLKKANSPYEINKRSHSWLKVINY
DYTDVLITGYTKEDIKFLLSYPDGTAAGFMEFMPNAERSKFHSIKHVKYETDEYVFVEPI
LCKVKHRFKTKHGKLRIPSFESWRV
NT seq 798 nt NT seq  +upstreamnt  +downstreamnt
atgttattgcattcaatcaaagaaccatttgatgacgatgattatattaccgagctgaag
tttgatggaattagactgatcctctccaagtttaatgatcagataaagctttatactcgt
cacaacaatgaggtaacaagcaagttcccagaactgttggatcttgatatacccaatgga
actgttttagacggtgaaatcattgtagctgccccaggcggcgcccctgattttgaagct
gtaatggaacgctttatgtctaagaaatcagctcataaggtggtttactgtgtattcgat
gtagtttatattgatggacattcagtcgctaataagccgctcacggaacgtaagagcata
cttttagaccttaatcttgaccacgataatgtctttgtgatcgaaggcctgcaaggaaac
ggattagcttacttcaatctggccaaagaaaagcatcttgaaggaatcgtactaaagaaa
gctaactccccttatgaaatcaataaacgttcccatagctggctgaaagtgattaattat
gattacacagatgtgcttatcactggctacaccaaagaggatataaaatttcttctgtct
tatcctgatggtactgcagctggttttatggaattcatgccgaatgcggaacgaagtaag
ttccactctataaaacatgtaaagtatgaaactgatgaatatgtatttgtagaaccgatc
ttatgtaaggttaagcacagatttaagactaagcatggtaaactccgcataccttccttc
gaatcctggagagtctaa

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