KEGG   Brenneria rubrifaciens: EH207_13765
Entry
EH207_13765       CDS       T05976                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
brb  Brenneria rubrifaciens
Pathway
brb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EH207_13765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brb03019]
    EH207_13765
   03016 Transfer RNA biogenesis [BR:brb03016]
    EH207_13765
Enzymes [BR:brb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EH207_13765
Messenger RNA biogenesis [BR:brb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EH207_13765
Transfer RNA biogenesis [BR:brb03016]
 Prokaryotic type
  tRNA degradation factors
   EH207_13765
SSDB
Motif
Pfam: RNB CSD2 OB_RNB HTH_12 S1 Rho_RNA_bind
Other DBs
NCBI-ProteinID: QCR09490
UniProt: A0A4P8QVD0
Position
complement(3022331..3024778)
AA seq 815 aa
MSQDPFLEREAEKYLSPIPSREFILAHIAKRDTPISREELAADLQLSGEEPLEALRRRLR
AMERDGQLVFTRRQCYALPEKLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEEMKRAIH
GDVVLAQPLAADRKGRREGRIVRVLEPRTGQIVGRYFVDAGVGFVVPDDSRLSFDILIPK
EAINGARMGFVVVVELTQRATRRTKAVGKIVEILGDNMGTGLAVDIALRTHDIPHSWPPK
VEEQVKDLAESVPESAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPNTPLDQEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
AQGKLTSYKFYEAVMSSHARLTYTKVWHILQGDAELRQHYQPLVGGLEELHKMYKVLEQA
REVRGGIAFETEEAKFIFNAERRIERVESVVRNDAHKLIEECMILANISAARFVEKNEEP
ALFRVHDQPSEDHVLALRSVLGELGLSLKGGMKPQPKDYAELMTEIAERPDHGMLQTMLL
RSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRKSRSTPTGGWH
SEMNEMLQLGMHCSMTERRADEATRDVADWLKCDFMQDHVGEVFTGIIASVTGFGFFVRL
NDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESRGQVYRLGDEVEIRVEAVHMDERNIDFA
LVSSARKPRGEGKTARDRAKKPDSREAKPSRRRNAARSPANFEPDAAFRNDGERKVKPEK
AKPKKNVDKAKKNAEKTRKIAAAAKAKRARKKSAE
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgtcacaagatccctttctggaacgagaagcagaaaaatatctatcccctatcccaagc
cgtgaatttattctggcccatatcgccaaacgggataccccgattagccgcgaagagctg
gccgccgatttgcaattatcgggtgaagagccgttggaagcgttgcgccgccgtttacgg
gcgatggagcgcgacgggcaattggtgtttacccgccgccaatgctatgcgctgccggaa
aagctggatctgctgcgtggtacggtaatcggccaccgtgacggttttggtttcctgcgc
gtcgaaggccgcaaagatgacctgtatctgtccgctgaggagatgaaacgcgccattcac
ggcgacgtggtgctggcccagccattggccgccgaccgtaaaggccgccgtgaggggcgt
attgtgcgcgtccttgaaccgcgcaccgggcagattgtcggacgttattttgttgatgcc
ggggtgggctttgtcgtcccggacgatagccggttgagtttcgatattctgatcccgaaa
gaagcgatcaacggcgcccgcatgggcttcgtggttgtcgtggaactgactcagcgcgcc
acccgccgaactaaagcggtcgggaaaattgtcgaaatcctcggcgataatatgggcacc
gggctggcggtcgatatcgcgctgcgcacgcacgatattccgcatagctggccgccgaaa
gtggaagagcaggttaaagatctcgccgaaagcgtaccggagagcgcgaaaaaaggccgg
gtggatttacgcaagctgccgctggtgaccattgacggtgaagacgcccgcgattttgac
gatgcggtttattgcgagaagaaacgcggcggcggctggcggctgtgggtggcgatagcg
gatgtcagctactatgtgcgtccgaatacgccgctggatcaggaagcgcgggcgcgcgga
acctcggtctacttcccgtcgcaggttgtaccgatgctgcctgaagtgctgtccaacggc
ctttgttcgctcaacccgcaggtggatcgcctgtgtatggtctgcgagatgaccgtatcg
gcgcagggtaaattgacgtcctacaagttctacgaagcggtgatgagttcgcacgcccgt
ctgacctacactaaagtgtggcatattcttcagggcgacgcggaactgcgccagcactat
cagccgctggtgggcggactggaagaattgcataagatgtacaaagtgctggagcaagcc
cgtgaagtgcggggcggcatcgcgtttgaaacggaagaagcgaagtttattttcaacgcc
gagcgtcggattgaacgggttgagtcggtggtgcgcaacgatgcgcacaaactgattgaa
gagtgcatgattctggcgaatatctccgcggcgagattcgtggagaaaaatgaagagccc
gccctgtttcgcgttcacgatcagccgagtgaagaccatgtgctggcattgcgcagcgtg
ctgggtgaactgggcctctcgctgaaaggcggcatgaagccgcaaccgaaagactatgcc
gaactgatgacggaaatcgccgagcgccccgaccacggaatgctgcaaaccatgctgctg
cgttccatgaaacaggcggtttacgatcccgaaaaccgggggcatttcgggctggcgtta
acctcttacgggcattttacctcgcctatccgccgctatcccgatttatcgttgcaccgt
gccatcaaatatttgctgagcgaccgtaaatcgcgctcaaccccgaccggcggctggcac
agcgagatgaatgaaatgctgcaactgggcatgcattgttcaatgaccgaacgccgggcc
gatgaagcgacgcgtgacgtggcggactggctgaagtgcgatttcatgcaggatcacgtc
ggtgaagtgtttaccgggattatcgccagcgtcaccggttttggtttctttgtccgcctg
aacgatctgtttatcgatgggctggtacacgtttccacgttggataatgactactatcgt
tacgataatatcggccagcgtttgatcggcgaatctcgcggtcaggtttaccgtttgggc
gatgaagtggaaattcgcgttgaggcggtccatatggatgagcgcaacattgatttcgcg
ctggtatcaagcgcgcgtaaaccgcggggcgaaggtaaaacggcacgcgacagagcgaaa
aaaccggatagccgggaggcgaaaccgagccgccgccgtaatgccgcgcgttcgccggcc
aattttgagcctgacgcggctttccgcaacgacggcgaacgcaaggtcaaaccggaaaag
gcgaagcctaaaaagaatgtggataaggcgaaaaagaacgctgagaaaacgcgtaagatt
gccgcggccgccaaagccaaacgcgccagaaaaaaatctgcggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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