KEGG   Brevundimonas sp. LM2: BZG35_02475
Entry
BZG35_02475       CDS       T04750                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brl  Brevundimonas sp. LM2
Pathway
brl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BZG35_02475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brl03400]
    BZG35_02475
Enzymes [BR:brl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BZG35_02475
DNA repair and recombination proteins [BR:brl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BZG35_02475
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: AQR60638
UniProt: A0A1S6ERG9
Position
complement(484241..486835)
AA seq 864 aa
MKGELETYQAKRRFGETPEPEGRKTVGKASAPLRYLIQRHAATRLHYDFRIEVDGVLKSW
AVTKAPSRDTTVKRLAVEVEDHPLDYGDFEGTIPAGNYGGGTVQLWDTGTWSPRHPDTLE
EDWSKGSIKMDLEGERLKGGWALVRLKSDRGKPSKRNNWLLLKEKDEHAVPGEGDALAEI
DASITTGRSMAEIAAGKAAPNAKPSVRKPAAKAKAVARTEPALTAPPAFTPIQLCKVADH
PPSGSGWAHEIKFDGYRVQLATGGGQAKLYTRRGHDWSDKFPEIVADAAKWPDGVVDGEL
CALDADHMPDFSALQSAIPDGKTDDLVLFAFDLLFEGAEDLRGLPLSHRKARLTAHIDRM
PKAARGRIRYVDHFATTGQAVLESACRMDLEGVISKKLDAPYSAGRSTTWLKSKCRGGDE
VVIGGWSSEDGTRFRSLLVGVQDGEGLRYLGRVGTGYSQPLMKTLLPALKTAAADASPFA
GKGAPRGGREIHWLKPVLVAEIEHGGYTEAGSLRHAAYKGLRADKPAAEVTERPQAPSPT
GRAAPATDLHVPGEAAPLKGGSAKGKVVVAGVTLSNPDKILWPAVGDHPAITKAELARYY
EAVAARILPHVADRPTSIIRAPEGVGGETFFQRHAMPGSNPRLKLIDVHERKPYVGVVDV
GGLVAIGQSGGLELHPWGCMPGDPEVPDQITFDLDPDEGLDFDDVIAAAKVVRKKLEALG
LAPFVKTTGGKGLHVVVPIKTDARSRVTWDQNKALAKAVSEAIRVEAPDRFTTTLAKKAR
GGKIFLDYLRNGRMATAVAPWSPRARPGAGIAYPLNWTQVKTGLDPTAFTLRTYAALLKK
PDPWKDFRASAVSLRPALKAMKVG
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgaagggcgagctggagacctatcaggccaagcgccgcttcggcgagacgcccgagcct
gaaggcaggaagacggtcggcaaggcgtccgcccccctgcgctatctgatccagcgccat
gcggccacgcggctgcactacgacttccgcatcgaggtcgacggcgtgctgaagtcctgg
gccgtgaccaaggccccgtcgcgcgacaccacggtcaaaaggctggcggtggaggtcgag
gaccacccgctggactacggcgatttcgaaggcaccatccccgccggcaactatggcggc
ggcacggtccagctgtgggacaccggcacctggtcgccccggcatcccgatacgctggag
gaagactggtccaagggctcgatcaagatggacctcgagggcgagcggctgaagggcggc
tgggccctggtgcggctgaagtccgatcgcggcaagccgtccaaacgcaacaattggctg
ctgctgaaggagaaggacgaacacgccgtgcccggcgagggcgacgccctggccgagatc
gacgcctccatcaccaccggccgaagtatggccgagatcgccgccggcaaggcggccccg
aacgcgaagccaagcgtgcgcaagccggcggcaaaggccaaggcggtcgccaggaccgag
ccggccctgacggctcccccggccttcacccccatccagttgtgcaaggtggccgaccat
ccgccctccggatccggctgggcccacgagatcaagttcgacggctaccgcgtccagctc
gccaccggcgggggccaggcgaaactctacacccggcgcggccacgactggtccgacaag
tttccggagatcgtcgccgacgccgccaaatggccggacggcgtggtcgacggcgagctg
tgcgccctggacgccgatcacatgcccgacttctcggccctgcagtcggccattcccgac
ggcaagaccgacgacctggtcctgttcgccttcgacctgctgttcgagggtgccgaggac
ctgcgcggcctgcccctgtctcaccgcaaggcccggctgaccgcccatatcgaccgcatg
cccaaggcggcgcgggggcgcatccgctatgtcgaccatttcgccaccaccggccaggcc
gtgctggaaagcgcctgccggatggatctggaaggcgtcatctccaagaagctggacgcg
ccctactccgccggccgctccaccacctggctgaagtccaaatgccggggcggggacgag
gtggtgatcggcggctggtcctccgaggatggtacccggttccgctccctgctggtcggg
gtgcaggacggcgaaggcctgcgctatctcggccgggtcggcaccggctactcccagccc
ctgatgaagaccctgctgccggcgctcaagaccgccgccgccgacgccagccccttcgcc
ggcaagggggctccgcgcggcggccgcgagatccactggctgaagcccgtcctggtcgcc
gagatcgagcacggcggctataccgaggccggatcgctgcgccacgccgcctacaagggc
ctgcgcgccgacaagcccgccgccgaggtcaccgaacgccctcaggcgcccagcccgacg
ggcagggccgcccccgccaccgacctgcacgtccccggcgaggcggcgccgctgaaaggc
ggctcggccaagggcaaggtcgtcgtggccggggtcaccctgtccaaccccgacaagatc
ctgtggccggcggtcggcgaccacccggccatcaccaaggccgagctggcccgctattac
gaggccgtggccgcgcgcatcctgccccacgtcgccgaccgtccgacctcgatcatccgc
gcgcccgaaggcgtcggcggcgagaccttcttccagcgccacgccatgcccggctccaac
ccccggctcaagctgatcgatgtgcatgagcgcaaaccctatgtcggggtcgtcgacgtc
ggcggcctggtcgccatcggccagtcgggcgggctggagctgcacccctggggctgcatg
cccggcgaccccgaagtccccgaccagatcaccttcgacctcgaccccgacgagggtctg
gacttcgacgacgtgatcgccgccgccaaggtggtgcggaaaaagctggaggccctgggt
ctggcccccttcgtcaagaccaccggcggcaagggcctgcacgtcgtggtgccgatcaag
accgacgcccgcagccgcgtcacctgggaccagaacaaggccctcgccaaggccgtgtcc
gaggccatccgcgtcgaggctcccgaccggttcaccaccaccctggccaagaaggcgcgg
ggcgggaagatcttcctcgactatctgcgcaatggccgcatggccacggcggtcgccccc
tggtcgccgcgcgcccggccgggcgccggcatcgcctatccgctgaactggacccaggtg
aagaccggcctggatcccaccgccttcaccctgcgcacctatgccgccctgctgaagaag
cccgatccgtggaaggatttccgcgcctcggccgtcagcctgcggccggcgctgaaggcg
atgaaggtcggctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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