KEGG   Brassica rapa (field mustard): 103829399
Entry
103829399         CDS       T03449                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103829399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103829399
Enzymes [BR:brp01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     103829399
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    103829399
 Complex C
   U5 SnRNP specific factors
    103829399
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 T2SSE AAA_11
Other DBs
NCBI-GeneID: 103829399
NCBI-ProteinID: XP_009103314
UniProt: M4D700
Position
A07:13881329..13889719
AA seq 2186 aa
MANLGGGAEAHARFKQYEYRANSSLVLTSENRPRDTHEPTGEPETLWGKIDPKSFGDRVA
KGKPQELEDKLKKSKKKERDVVADDSVSARQSKRRRLREESVLTDTDDVVYQPKTKETRA
AYEAMLSLIQQQLGGLPLNIVSGAADEILAVLKNDAVKNSEKKAEIQKLLNPIPDQIHQV
FDQLVSIGKLITDFQEGGDSGGGKENVDEGLDDDVGVAVEFEDNEEDGEESDPDMVQEED
DEEDEEPQKTGGMQVDAGINEEDAGDANEGTSLNVQDIDAYWLQRKISQAYEQQIDPQQC
QVLAEELLKILAEGDDRDVENKLLMHLQFEKFSLVKFLLRNRFKIVWCTRLARAEDQEER
NRIEEEMRGLGLELAAIVDQLHATRATAKEREENLQKSINEEARRLRDETVGDGGRGRRD
VADRDLESGWLKGQRQMLDLESLAFDQGGLLMANKKCDLPAGSYRTHGKGYDEVHVPWVS
KKVDISEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKADNILLCAPTGAGKTNV
AMLTILQQIESSRNEDGTLNHGKYKIVYVAPMKALVAEVVSNLSNRLKDYGVTVRELSGD
QSLSGKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV
ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLGQQYIGI
SVRKPLQRFQLMNDLCYEKVVAGAGKQQVLIFVHSRKETAKTAQAIVDTAMAKDTLSRFL
KEDSASREVLLSQIELIKNGDLRKLLPYGFAIHHAGLTRGDREIVEALFGEGHVQVLVST
ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDEYGEGIIITG
YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWLGYTYLYIRMVRN
PTLYGLAPDALVKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY
ISHGTIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETL
EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL
NLSKMVGKRMWSVQTPLRQFHGIPNEILMKLEKKDLVWERYYDLSSQELGELIRSPKMGR
PLHKFIHQFPKLVLAAQVQPITRTVLRVELTITPDFQWDEKIHKYVEPFWIIVEDNDCEK
ILHHEYFLLKKQYISEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSQTVLPVSFRHLILP
EKYPPPTELLDLQPLPVTALRNPNYERLYQDFKHFNPVQTQVFNVLYNTNDNVLVAAPTG
SGKTICAEFAILKNHQEVLLRQEDDTKRQSGPDATMRVVYIAPKEAIAKEQFRIWERKFG
KVLGLRVVELTGETALDLKLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHL
IGEGQGGTVLEVIVSRMRYISSQGDNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPG
VRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRTHVRLTAVDL
MAYSHIDNPQSPDFLLGKLEELEDFVDELREETLKETLRHGIGYLHEGLCSQDQEIVTQL
FEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYAVSDLLQMMGRASRPL
LDNAGKCVIFCHAPRKEYYKKFLYEAFPVESHLQHFLHNNFNAEVVAGVIENKQDAVDYL
TWTLMYRRLPQNPNYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEIEDEMDLSALNL
GMISSYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDRVRRLINHQ
RFSFENPNCTDPHVKANALLQAHFSRQSITTNLEMDQREVLLSATRLLQAMVDVISSNGW
LNLALLAMEASQMVTQGMWERDSMLLQLPHFTKDLAKRCQENNIETVFDLVEMEDEERQE
LLKMKDTELLDIARFCNRFPNIDLTYEVVGSEDVTAGKEVTLQVMLERDMEGRTEVGAVD
APRYPKTKEEGWWLVVGDTKTNQLVAIKRVSLQKKAKVKLDFQVPSEAGEKSYTLYFMCD
SYLGCDQEYAFSLDVKESGAENQMEE
NT seq 6561 nt   +upstreamnt  +downstreamnt
atggcgaacttgggaggcggtgcggaagctcatgctagattcaagcagtatgagtacaga
gccaactccagcttggtgctaaccagtgagaatcgtcctcgcgacacacacgagcctacg
ggagagcctgagactctgtgggggaagattgatcccaagtcttttggagatagagttgct
aaggggaagcctcaggagctggaggataagcttaagaagtcgaagaagaaggagcgtgat
gttgttgcggatgattctgtttctgctcggcagagcaagaggcgccggctcagggaagag
agtgtgctcacggatactgacgacgtggtttatcagcccaagactaaggagacgagggct
gcttatgaggctatgcttagtctgattcagcagcagctgggtggtttgcctctgaatatt
gttagtggtgctgcggatgagatcctggctgttctcaagaacgacgcagtgaagaactct
gaaaagaaggcggagattcagaagctgctgaaccctattcctgatcagattcatcaggtt
tttgatcagcttgtttccattgggaaattgatcaccgactttcaagaaggtggtgattcc
ggtggtggtaaggaaaatgtagatgaggggcttgatgatgatgttggtgtggctgttgag
tttgaggacaatgaggaagatggcgaggagagtgatcctgatatggtacaggaagaagat
gatgaagaggatgaggaacctcagaaaactggaggtatgcaagtggatgcagggataaat
gaagaggatgcaggagatgcgaatgagggcaccagtctgaacgttcaggatattgatgct
tactggctccagagaaagatatctcaggcttatgaacagcagattgatccgcaacagtgc
caagtactagctgaagagctgcttaagatactcgctgaaggggatgatagggatgttgag
aacaagctgcttatgcatcttcagtttgaaaagttcagcctcgttaagtttctgctgcgg
aaccgttttaaaattgtgtggtgtacgcgattggctagggcagaggaccaggaagagagg
aacagaattgaagaggagatgagagggttgggtctggaactggcagcaattgtggatcag
ttgcatgcaacaagagcaacagcgaaagagagggaggagaacctgcagaaaagtattaat
gaagaggcccgacgtctgagggacgaaactgttggagatggaggtcgaggcaggagagat
gttgctgatagagatttagagagtggttggttgaagggtcagcgtcagatgctggacttg
gagagcttggcttttgaccaaggtggtctcctgatggcgaataagaagtgtgaccttcca
gctggctcctacagaactcatggcaagggatatgatgaagttcatgtgccatgggtttct
aaaaaggttgatatcagtgagaagcttgtgaagatcaccgagatgccagattgggctcag
ccggcttttaagggaatgcaacagctgaacagggttcagagcaaagtgtacgatacagcg
ctatttaaggcagataacatacttctttgtgctccaactggtgctgggaaaaccaatgtt
gccatgctcaccatactgcagcaaattgagtccagtaggaacgaagatggaacactcaac
catggaaagtacaagattgtgtatgtcgcacccatgaaagccctagttgctgaggttgta
agtaacctgtctaatcgtctgaaggattatggagtcactgtgagggaactcagtggggat
cagtccctcagtgggaaagaaattgaggagacccagataattgtcaccacaccagagaag
tgggatatcatcacaaggaagtctggtgatcgcacttacacccagcttgtgagacttctt
ataatcgacgagatccatcttcttcatgataatcgagggcctgtgcttgaaagcattgtc
gctaggactctgaggcagattgaaaccacgaaggagaatattcgcttggtgggtttgtca
gccacactgccaaattacgaagatgtggccttatttttgcgggttgatcttaagaaaggg
ttgtttaaattcgaccgcagctacagaccggtgcctcttggtcagcagtatattggaatc
agtgtgagaaaaccattgcagaggttccagctgatgaatgatctttgttatgagaaagta
gtggctggtgctggaaagcaacaggttcttatttttgttcactcgaggaaggaaacagca
aaaactgcgcaagcaatagtggacaccgcaatggcgaaggatacactcagtagattcttg
aaagaagacagtgcaagtcgtgaagttcttctgagtcagattgaacttataaagaacggt
gatctgaggaaacttctgccttacggttttgctattcatcatgctgggctaacaaggggt
gatcgtgagatagttgaggccctttttggtgaagggcatgtgcaagtcttggtttccaca
gcaactcttgcatggggtgtgaatctgcctgctcatactgtcataatcaaaggaacgcag
gtctataatcctgagaaaggggcgtggatggaactcagtcccctggatgttatgcagatg
cttggtcgtgctggaagacctcagtatgatgaatatggagagggtataattatcactggc
tacagcgagctgcagtattatctgtctttgatgaatgagcaactacctattgagagccag
ttcatttccaaacttgctgatcagcttaatgctgaaattgttcttggaactgttcagaat
gctaaagaggcttgccactggcttgggtatacgtatctctatatccgtatggttcgtaat
ccaacgctgtatggtttagcgccggatgcccttgtaaaagacgtagtcttggaggaaaga
agagctgacctgatacactcagctgctactatcttggacaaaaacaacttggttaagtat
gacaggaaaagtggatatttccaagttactgatttgggaaggattgctagctactactat
ataagtcatgggaccatagctacgtacaatgagcatttgaagccaacgatgggtgatata
gatctttatcgtctgttctcactgagtgaggagttcaagtatgtgactgttcggcaagat
gagaagatggaactggccaaacttctggatcgtgtcccaattccgatcaaggaaacactg
gaggagcccagtgcaaagattaatgttttgctacaggcatacatttcacagctaaagctt
gagggtctttctttgacatcagacatggtttatataactcagagcgctggacgtcttgta
cgagctctctatgaaattgtattgaagcgcggatgggctcaactggctgagaaagctctg
aacttgtctaaaatggttgggaagaggatgtggagtgtccagacacctctccgtcagttt
catggaattcctaatgagattttgatgaagttggagaagaaggatttggtgtgggagagg
tactatgacctgtcgtcacaggagctaggagagcttattcgtagtcctaagatgggcaga
ccgcttcacaagttcatccaccagttcccaaaattggttcttgcagcacaagttcagcct
attactcgaactgttctgcgggtggagctcacaataacaccagacttccagtgggacgag
aaaattcataaatacgtggagccgttttggatcattgtggaagacaatgattgtgagaag
atccttcatcatgagtattttctattgaagaagcagtatatcagtgaggatcacaccttg
aacttcactgtcccaatctttgaaccgctgccacctcagtattttgtccgagtggtttca
gacaagtggcttgggtcgcagactgtgttgcctgtatcttttagacaccttatacttcca
gaaaagtacccgccacctacagagctactggacttgcagcccctccctgtcacagcgctt
aggaatccgaattatgagagactctatcaggatttcaagcatttcaatccggtgcagact
caagtctttaatgttttgtataacactaacgataatgtgttggttgctgctccaacggga
agtgggaagactatatgtgctgagtttgctatattgaagaatcatcaagaagtactccta
aggcaggaagatgatactaaaaggcaaagtggacctgatgctacaatgcgtgttgtctat
attgctccgaaagaggctattgctaaggagcagtttcgcatctgggagaggaagtttggg
aaggttcttggtttacgggttgttgagctgaccggggagacagcgttggatcttaagctg
ctggagaaaagtcagataattataagtactcctgagaaatgggatgctctgtctcgcagg
tggaaacagagaaaatacgtacaacaggttagtcttttcattgtggacgagcttcatcta
attggtgaaggtcaaggtggtacagtgctggaggtgatagtctctagaatgagatatatt
tctagtcagggtgataataagattaggattgttgcgctttctacttcccttgcaaatgcg
aaagatcttggggagtggattggggccagttctcacggcctattcaatttccctcctgga
gtccgtcctgttccactggagatccacattcaaggagtggatatatccagttttgaagcc
aggatgcaggcaatgaccaagccaacctacaccgccatagtccagcatgccaagaacaag
aagccggctatagtttttgtcccaactcgtacacatgtccgtttgactgctgtggatctg
atggcttactctcacattgacaacccacagagccctgatttcctgttagggaaactagaa
gaacttgaggattttgttgatgaactccgcgaggaaacattgaaggagacactgcgccat
ggtattgggtacttgcacgagggtttatgcagtcaggatcaggagatcgtgacacagctc
tttgaagctggacggattcaggtttgtgtgatgagcagttcattgtgttggggcactcca
ttaactgcacatctggtggtggtgatggggacgcagtactacgatggaagggagaattca
cactcagattatgcagtctctgatttgcttcagatgatggggcgtgctagccgacctcta
cttgacaatgctggaaagtgtgtgatattctgccatgctcctcgtaaagagtattacaag
aagtttctttatgaagccttccctgtggaaagtcatctccagcatttcttgcataataat
ttcaacgcagaagtggttgctggggttatagagaacaagcaagatgcagttgattatctt
acatggactttgatgtacaggaggcttccccagaatcctaactactacaatcttcaagga
gtgagccacagacatttgtctgatcacctatcagagctggttgagaacaccttgtctgat
cttgaagccagtaagtgcattgagatagaggatgagatggacctctctgctctcaacctt
gggatgatttcatcctactattacatcagttacaccaccatcgagcgcttcagttctctt
ctgtcttctaaaaccaagatgaagggacttcttgagatcttaacatcggcttcagagtat
gacatgatcccaataaggcctggcgaagaggacagagttaggaggctcatcaatcaccag
aggttctcgtttgaaaacccaaactgcacagatcctcatgtcaaagcaaacgctcttctt
caggctcatttctcgaggcaaagcattaccacgaacttggaaatggatcagcgtgaggtc
cttctatcagcaaccagacttctacaggcgatggtggatgtgatatcaagcaatggctgg
ctgaatcttgctcttttagcaatggaagcaagccagatggtgactcagggcatgtgggag
cgtgactcgatgcttttgcagctccctcacttcacaaaggacttggcaaaaagatgccag
gagaataacattgaaaccgtatttgatcttgtggagatggaggatgaagaacgccaagag
cttctcaagatgaaggacactgagctcttagacattgccagattctgcaaccgcttccca
aacattgacctgacttacgaggttgtgggcagcgaagatgtgaccgcagggaaagaggtg
acattgcaggtgatgcttgagagagacatggaggggaggacggaagtgggagctgtggat
gcacccaggtatcccaagaccaaagaagaagggtggtggctggttgtgggggacaccaag
acgaaccagttggtggccatcaagcgtgtatccttgcagaagaaagcgaaggtgaagctg
gatttccaagtaccgagtgaagcaggagagaagtcgtacacactctacttcatgtgcgac
tcttacttaggctgtgaccaagagtacgctttctctcttgatgtcaaggaatctggcgct
gaaaatcagatggaagagtga

DBGET integrated database retrieval system