KEGG   Brassica rapa (field mustard): 103833047
Entry
103833047         CDS       T03449                                 
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
  KO
K10885  ATP-dependent DNA helicase 2 subunit 2
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    103833047
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brp03400]
    103833047
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     103833047
SSDB
Motif
Pfam: Ku Ku_PK_bind Ku_C Ku_N
Other DBs
NCBI-GeneID: 103833047
NCBI-ProteinID: XP_009107395
UniProt: M4DC87
Position
A08:complement(3597583..3604258)
AA seq 682 aa
MARNREGLVLLVDIGPAMHSVLPDVEKTCSLLMQKKLIYNKFDEVGIVVFGTQETENELA
RDIGGYENIKVLRNIKVVDELVVDLVKRLPRGPVAGDFLDALIVGMDMLIKMYGAGQKGK
KRLCLITNAACPTKDPFEGTKDEQVSTIAVKMAAEGIKMESIVMRADASGDVDERIIEEN
DHLLTLFSTNAIAKTVYVESPLSLLGSLKTRRVAPVTLFRGDLEINASMKIKVWVYKKVA
EERLPTLKMYSDKAPPSDKFAKHEVKIDYDYKVTAETSEVLAPEERIKGFRYGPHVIPIS
PDEMETLKFKTEKGMKLLGFTDASNILRHYYMKDVNIVVPDPSKEKSVIAVSALAREMRQ
TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFSRFP
ASLKPDEQQQAVADNLVKMLDLAPSPKEEVLKPELTPNPVLQRFYEYLELKSKSTDAALP
PMNEAFKRIMEQDPELSSSNKSIMDSFSGSFEVKENPKLRKASKRLLRDKPSGSDDEDNR
MITYNPNENSIDTVGDANPVQDFEAMISRRDGNDWTDKAISEMKKRIVKLVEDSSTTDEG
DKALECLLSLRKCCVLEQEPKQFNEFLNHLYELCQEKKLSHFLEHFTSKKITMIPKSEAA
DSDVADEEAADFTLKQEPKLET
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggcgcgtaaccgggagggtttggttttgttggtggatataggccctgccatgcatagt
gtactccctgatgtcgaaaagacatgttctttgctcatgcaaaagaagttgatttacaac
aagtttgatgaagttggaattgttgtctttggaactcaagaaaccgaaaatgagcttgct
agggacataggtggatatgagaacattaaggtgttaaggaacatcaaagttgttgatgaa
ctcgtggttgatcttgtaaagcgtctccctcgaggacctgtagctggcgactttcttgat
gctttgattgttgggatggatatgcttataaagatgtatggtgctgggcaaaaagggaaa
aagcggttgtgtctcatcaccaatgcagcttgtcctaccaaagatccatttgaagggacc
aaagatgagcaagtcagtaccattgctgtgaaaatggctgcagagggtataaagatggaa
agcattgttatgagggctgatgcaagcggtgatgttgatgagaggataatagaggagaat
gatcatttgttgactttgttctccaccaacgccattgcgaaaacagtgtatgttgagagt
ccactctcactgctaggttccttaaagacccggagagttgctcctgttactttgttcaga
ggtgatcttgagattaacgcatcaatgaagatcaaggtgtgggtttataagaaagtcgct
gaggagagacttcctacgctaaaaatgtattctgacaaggcccctccaagtgacaagttt
gctaaacacgaagtgaagatcgattatgattataaagttaccgcagagactagtgaagtt
cttgctccagaagaaaggatcaagggctttcgctatggacctcatgtcattcctatctca
ccggatgagatggaaacactcaagttcaaaactgaaaagggcatgaagcttcttggattc
actgatgcatcaaacatactccgacattattacatgaaagacgtgaacatagttgttcca
gacccgagcaaagaaaaatctgtgattgcagtctctgcgcttgcaagagaaatgaggcaa
acaaacaaggtggcaattgtacgttgtgtctggagaaacggacaagggaatgtagttgtt
ggggtcctcactccgaatgtgtctgaacgagatgacacccctgattctttctacttcaac
gtgctgcctttcgccgaggatgtccgcgagtttccgtttccttctttcagtagatttcct
gcgtcgttgaagcctgatgagcaacagcaagcggtggctgataacttggttaagatgctt
gaccttgcaccttctcctaaagaggaagtgctaaagcctgagcttactcctaacccagtt
ctgcagcgcttttatgaatacctcgagttgaaatcaaaatccacggacgctgctttacct
ccaatgaatgaagctttcaagaggattatggagcaggatccagaactctcttccagcaat
aaatctataatggattcttttagtggaagttttgaagtgaaggagaacccaaagttgaga
aaggcttctaagagattgttaagggataagccatctggttcagatgatgaagacaatcgc
atgattacttataatcccaatgagaacagtattgacacagttggagatgcaaacccggtt
caagattttgaagctatgatatctcgaagagatggcaatgattggactgataaagcaatc
agtgagatgaaaaaacggatagtgaagctggtggaagatagtagtaccaccgatgaaggt
gataaagcattggaatgtttgctctctttacgtaaatgctgcgtcttggaacaggagcca
aagcagttcaatgagttcttgaaccatctatacgagttatgccaagaaaagaagttgtct
cattttcttgaacattttacgtccaagaagatcacaatgattcccaaatcagaagcagca
gacagtgatgtggctgacgaggaggctgcagatttcaccctcaaacaagagccaaagctc
gagacctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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