KEGG   Brassica rapa (field mustard): 103837129
Entry
103837129         CDS       T03449                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 3, chloroplastic
  KO
K16911  ATP-dependent RNA helicase DDX21 [EC:3.6.4.13]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:brp03009]
    103837129
   03036 Chromosome and associated proteins [BR:brp03036]
    103837129
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103837129
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    103837129
SSDB
Motif
Pfam: DEAD Helicase_C GUCT ResIII zf-CCHC CMS1 YgbB ERCC3_RAD25_C AAA_19
Other DBs
NCBI-GeneID: 103837129
NCBI-ProteinID: XP_009111705
UniProt: M4F673
Position
A09:3245118..3249665
AA seq 743 aa
MASTVGVPSLYQVPHLETSKPTSKKRSTSLSLSLDNPFFSSPLSLRRTRLIHSSLLPPSA
VATPNSVLSEEAFKSLGLSDEFDLEEGSSSEDDAEELAISKLRLPQRLGESLEKRGITHL
FPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKRLTEQSGDYSAFRKSGRLPKFLV
LAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALSRGVDVVVGTPGRIIDLIEG
RSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPQKRQSMLFSATMPTWVKKLARKYL
DNPLNIDLVGDQDEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDAD
EVSLALSNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHY
ELPNDPETFVHRSGRTGRAGKEGSAILMHSSSQKRTVRSLERDVGCRFEFISPPTVGDLL
EASADQLVATLNGVHPESIKFFSATAQKLFEEKGTDALAAALAHLSGFSQPPSSRSLLSH
EQGWVTLQLIRDPTNARGFLSARSVTGFLSDVYRPAADEVGKIFMIADERVQGAVFDLPE
DIAKELLEKEVPEGNSLSMITKLPPLQDDGPSSDNYGRFSSRDRMPRGGGGSRGSRFGGR
GGSSRGRDDDRRSRSSGGGGSSWSRDGGGSRGSSDGWLIGGGSDRRPSSSSRGPSRERSF
GGACFTCGSSGHRAADCPDKRGF
NT seq 2232 nt   +upstreamnt  +downstreamnt
atggcgtcgacggtgggagtcccatcactataccaagtccctcaccttgaaacctccaaa
cccacttccaagaagaggtccacttccttatctctctctctagataaccctttcttctcc
tctcccttatctctccgaagaactcgtcttatccactcttcactccttcctccctccgcc
gtggccactcccaactccgttctcagcgaggaagctttcaaaagcctcggcctttcggac
gagttcgacctcgaggagggctcctcctccgaagacgatgctgaagagctcgctatctcg
aagcttcgtttgccgcagcgtctcggcgagtctctggagaagcgtggtatcactcacctc
ttccccattcagagggctgtgttggttcctgcgctggaaggacgagacattatagctcgt
gcaaagacgggaactgggaagactttggctttcggtatccctatcatcaaacgcctcact
gaacaatctggagactactctgctttcaggaagtctggtcgtcttcctaagttccttgta
cttgcgcctacacgagaactagctaagcaagtggagaaggagattaaggagtctgcacct
tatctaagcaccgtttgtgtatacggtggtgtctcctacaccattcagcagagtgctttg
tcacgtggcgttgatgttgttgttggaactcctggaaggatcattgacttgatagaagga
aggagcctcaaactgggtgaagttgagtacttggttcttgacgaagctgaccagatgctt
gctgttggttttgaggaagctgtggaatcgattcttgagaatctcccacagaagagacag
agtatgcttttctcagcaactatgcctacttgggtgaagaagttggcgaggaagtatctt
gacaatcccttgaatatcgatctggttggtgaccaagatgagaagcttgcggaggggatc
aagctttatgcaatctcagcgacatcaacatcaaagcgcactattctaagcgaccttata
acagtatatgcaaagggtggcaagaccattgtttttacccaaacaaaaagagatgcagat
gaggtctctctagcattatcaaacagcatagcttctgaagcacttcatggagatatctct
cagcatcaaagagaaagaacgctcaacggtttccgccaagggaaattcacagttctagtt
gctactgatgttgcgtctcgtggacttgacatcccaaacgtagatctagttatccactac
gaacttcctaatgaccctgagacttttgtgcaccggtctggtcgtaccgggcgtgcaggg
aaagaaggctcagctattctaatgcactctagtagccagaagagaacggtgaggtctctg
gagcgtgacgtaggctgcagatttgagtttattagcccaccaactgttggagacttgttg
gaggcgtcagcagaccaattggtggccactctgaacggcgttcaccctgagtctataaag
tttttctcagcaactgctcaaaaactatttgaggaaaaaggaacagatgccttagctgca
gctctggctcacctgagcggtttctctcagccaccttcatctagatctctcctcagtcat
gagcagggatgggtaactttgcagttgatacgagatccaacaaacgctagaggcttcctg
tctgcgaggtctgtcactggttttctttcagatgtttaccgtccagctgcagatgaagtt
ggaaaaatcttcatgatcgcagatgaaagggtgcaaggggctgtttttgatctgccagag
gacatagctaaagagctgttagagaaagaagtgccagaaggaaacagtttatccatgatt
acaaagttgcctccgttgcaagatgatggaccgtctagtgataactatggacggttctct
agcagagacaggatgcctagaggaggaggaggttcaagagggtcgagatttggcggtcga
ggaggctcatcacgaggacgtgatgatgatagaagaagtagaagcagtggtggtggagga
agcagctggtcccgtgatggtggtggttccagaggaagttctgatggttggttgattggt
ggtggtagtgacagaagaccatcatcaagcagcagaggtccttcccgggagaggagtttt
ggcggtgcttgcttcacttgtggaagctcaggacacagggcagctgattgtcctgataag
agagggttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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