KEGG   Brassica rapa (field mustard): 103837365
Entry
103837365         CDS       T03449                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
  KO
K07466  replication factor A1
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03030  DNA replication
brp03420  Nucleotide excision repair
brp03430  Mismatch repair
brp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103837365
   03420 Nucleotide excision repair
    103837365
   03430 Mismatch repair
    103837365
   03440 Homologous recombination
    103837365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:brp03000]
    103837365
   03032 DNA replication proteins [BR:brp03032]
    103837365
   03400 DNA repair and recombination proteins [BR:brp03400]
    103837365
Transcription factors [BR:brp03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    103837365
DNA replication proteins [BR:brp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    103837365
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     103837365
   MMR (mismatch excision repair)
     103837365
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     103837365
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon DUF223
Other DBs
NCBI-GeneID: 103837365
NCBI-ProteinID: XP_009111971
UniProt: M4F4E5
Position
A09:complement(3936660..3939771)
AA seq 623 aa
MQNSVTPDAISAVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTRVKAMFTAS
LTPEIVSGNIQNLGLIRLVDFTVNDISSKSTKYFLVTKCESVASALDCEIDLEGKKDEEE
GGEAAKRQKLDHSPVSDVVSTGITLKPKQEFVAKSASQIITEQRGNAAPAARMAMTRRVH
PLVSLNPYQGSWTIKVRVTNKGTMRNYKNAKGEGCVFNVELTDEEGTQIQATMFNDAARK
FYDRFHLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEETFVPETKFNFV
PIEELGMYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWN
DLATGVGQELLDMADKSPVIAIKSLKVGDFQGVSLSTIRRSNVVINPESPEAKKLKSWFD
SEGKEASMSSIGSGMSPLAKNGSWSMYTDRVLLSHITSNPSLGEEKPVFFSTRGYISFIK
PDQTMWYQACKTCNKKVTEAMDSGYWCEGCQKKDEECSLRYIMVVKVSDSTGEAWFSSFN
DEAEKIIGCSADELNKLRSEGGEVNEFQTKLKEATWSSHVFRISVTQNEYNGEKRQRVTV
KGVAPVDFAAEARLLLQDISKKN
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgcagaactcggtgaccccagatgctatctccgccgtattgtcaaacccatcctttgat
tcgtcttccgatcgatctgagatcgtcgttcaagtcgtcgatctcaagcctatcggcaat
cgttatacgtttagtgcaaacgatgggaagacgagagtcaaagctatgtttacagcttcg
ttaacacctgagatcgtttctgggaatattcagaatctgggtttgatccgtctcgttgat
ttcactgttaatgacatctccagcaaatcaacaaagtattttcttgtgactaagtgtgag
tctgttgcgtctgcgcttgattgtgagattgacttggagggtaagaaggacgaggaggag
ggtggtgaggcggccaagaggcagaagctagatcactctcctgtgagtgatgttgtttca
actggtatcacgttgaaaccgaaacaggagtttgttgccaagtcagcttctcagataatc
actgaacagaggggaaatgctgcaccagctgcaagaatggccatgactagaagagtccat
ccacttgtgtccttgaacccctatcaaggaagctggaccatcaaagtccgagtcaccaac
aagggaaccatgagaaactacaagaacgctaaaggagaaggatgtgtcttcaacgtcgaa
ctaacagatgaagaaggaacacaaattcaagctacgatgtttaatgatgctgcaaggaag
ttttatgacaggttccatctcggaaaggtctattatatctctagaggatcacttaaactt
gctaacaagcagttcaagacagtccagaatgattacgagatgacactgaatgaaaactca
gaggtggaggaagctagcaacgaggaaacgtttgttcctgagacgaaattcaactttgta
cccattgaagagttgggtatgtacgtgaatcagaaggagcttattgatcttattggagtt
gttcaaagtgtttctcctaccatgagtattagaaggagaacggacaatgagatgataccc
aagagggatataactttggctgatgagtcaaagaaaaccgttgtggtgtctctgtggaac
gacctggcaactggcgtaggtcaggagcttctggatatggctgataagtctcctgtgatt
gcaatcaagtctctcaaagttggagactttcaaggtgtttcgttgtccaccatcaggaga
agcaatgtggtgataaatcctgaatcaccagaggcgaaaaagctgaaatcttggtttgat
tctgaaggcaaggaggcgtccatgtcttccattggctcagggatgagcccacttgctaag
aatggatcttggtctatgtatacagaccgagtcctcctctctcacatcacaagcaaccca
tctctaggagaggaaaagcctgtgtttttcagcacaaggggttacataagcttcatcaaa
ccagaccagacaatgtggtaccaagcgtgtaagacttgtaacaagaaagtgactgaagca
atggactctggttactggtgtgaaggttgccagaagaaagatgaagaatgcagcttaagg
tacataatggtggtgaaagtctctgactcaacaggagaagcttggttttcatcattcaac
gatgaagcagagaagattattggatgttcagctgatgaactcaacaaactaagatctgag
ggaggtgaagttaatgagtttcagacaaagctgaaagaagcaacgtggtcgtctcatgtc
ttcaggattagtgtcactcagaatgagtacaatggtgagaagaggcagagggtgactgtc
aaaggagtggctcctgttgattttgcagctgaagcaagattgttgctccaagacatctcc
aagaagaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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