KEGG   Brassica rapa (field mustard): 103841729
Entry
103841729         CDS       T03449                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103841729
   03041 Spliceosome [BR:brp03041]
    103841729
   03036 Chromosome and associated proteins [BR:brp03036]
    103841729
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103841729
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     103841729
Spliceosome [BR:brp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    103841729
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    103841729
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 103841729
NCBI-ProteinID: XP_009116530
UniProt: M4CT57
Position
A09:36618764..36622080
AA seq 611 aa
MSTSWADVADSDNAASRAKPAYVPPHLRNRQSEPAAPLPGNDRGGGYGGQPSRWAPGGGG
GGGGYRADAGRTGYAYGGRGSTGGGGGWNNRGGGGGGGWDREVNPFGDDVDLEPAFTEQE
NTGINFDAYEDIPIETSGGDVPPPVNTFAEIDLGEALNLNIRRCKYVRPTPVQRHAIPIL
LAQRDLMACAQTGSGKTAAFCFPIISGILRDQNPQRPRGSRTVYPLAVILSPTRELASQI
HDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIK
FLALDEADRMLDMGFEPQIRKIVEEMDMPPRGMRQTMLFSATFPREIQRLAADFLANYIF
LAVGRVGSSTDLIAQRVEFVHESDKKSHLMDLLHAQRDTGNHDKQSLTLVFVETKRGADS
LENWLCMNDFPATTIHGDRTQQEREVALKSFKSGRTPILVATDVAARGLDIPHVAHVVNF
DLPNDIDDYVHRIGRTGRAGKSGVATAFFNEKNAQLARQLAELMQEANQEVPEWLTRYAS
RASFGGGKKRSGGRFGGRDFRREGSYGGRGGGSGGGGNDYYGGGGGGGYGGGGYGGAPSG
GYGGQVTSAWD
NT seq 1836 nt   +upstreamnt  +downstreamnt
atgagtacatcatgggcagacgtggctgattcagacaacgccgcttccagggcgaagcct
gcttacgttccccctcatttaaggaacagacaatccgagcctgctgctcctttgccagga
aatgaccgtggtggaggatacggtggtcaaccctctcgctgggctcctggcggtggtggc
ggtggaggtggttacagggctgatgcagggcgtaccggttacgcttacggtggacgagga
agtactggtggtggtggtggttggaacaacagaggtggaggaggaggaggaggatgggac
cgtgaagtgaatccctttggagatgatgttgatctagagcctgcctttacagagcaggag
aacaccggcattaactttgacgcctatgaggatatccccattgagaccagcggcggtgac
gtgcctcctcctgtcaacacgtttgcggagattgatcttggggaggcgttgaatctcaac
atcaggaggtgcaagtacgtgaggccgacgccagtgcagcgtcacgcgattcccatactg
cttgctcagagggatttgatggcgtgtgctcagacggggtctgggaagaccgctgctttt
tgctttccgatcattagcgggatcctgagagatcagaatccgcagaggcctcgtgggtca
aggacggtttatcctcttgctgttatcctctcgccaacaagggagctggcaagccagata
catgatgaagccaaaaagttctcataccaaactggtgtgaaggttgttgttgcttatgga
ggaacacctattaaccagcagctaagggaactggagagaggagttgacatccttgtggca
actcctggccggttgaatgatttgctagagagagctagagtctcgatgcagatgattaag
tttttagctctcgatgaggcggacaggatgctggacatgggttttgaaccacaaattaga
aagattgttgaagagatggacatgcctccacgtgggatgagacaaacaatgctgtttagt
gctacgtttcctagggagattcagagactcgctgctgattttctggcaaactatatattt
ttggctgtgggaagggtgggttcaagcactgacttgattgcccaaagggttgaattcgtc
cacgagtctgacaagaagagtcatctcatggatctgctacacgcccagagagacactggc
aaccatgacaagcaatcattgacattggtttttgtggagacgaagagaggagccgactca
ttggagaactggttgtgcatgaatgattttccagcaaccaccattcacggtgacagaaca
caacaggaaagagaagtggcactgaagtcattcaaaagtgggaggacacccattttggtc
gcaacagacgtggcagcacgtggacttgacattccacacgtggctcatgtggttaacttc
gatctaccaaatgacattgatgactatgttcaccgcatcgggagaacaggacgtgcaggc
aaatccggcgtagctacagctttctttaatgagaagaatgcgcagctggctaggcagctc
gctgagctgatgcaagaagctaaccaagaggtgcctgagtggctcacgcgatacgcttca
cgtgcttcatttggcgggggtaagaaacggtctggtggaaggtttggtggccgtgacttc
agaagggaaggctcttacggcggtaggggaggaggcagtggtggcggtggaaatgactac
tatggtggaggaggaggaggaggctatggtggcggtggatatggtggtgcaccaagtggt
ggctatggtggacaagtgaccagtgcgtgggattag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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