KEGG   Brassica rapa (field mustard): 103844229
Entry
103844229         CDS       T03449                                 
Name
(RefSeq) probable pectate lyase 1
  KO
K01728  pectate lyase [EC:4.2.2.2]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp00040  Pentose and glucuronate interconversions
brp01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:brp00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    103844229
Enzymes [BR:brp01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.2  pectate lyase
     103844229
SSDB
Motif
Pfam: Pectate_lyase_4 Beta_helix
Other DBs
NCBI-GeneID: 103844229
NCBI-ProteinID: XP_009119265
UniProt: M4DFR8
Position
A10:complement(1652517..1656564)
AA seq 431 aa
MAVLPTWILAMMCLLFFVGAMENSTHDKISSLSSSDENEWNTHAVTNPDEVADEVIALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDANWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPNDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRTEGDLLQNGAYFTASGAASSGSYARASSLAAKSSSLVATITNDAGA
LPCRRGRQCTS
NT seq 1296 nt   +upstreamnt  +downstreamnt
atggcggttcttccgacatggattttagctatgatgtgtctactcttcttcgtcggagca
atggagaacagtacgcacgacaagatctcatctctctccagttccgacgaaaatgaatgg
aacacgcatgcagtgacaaatccagatgaagtagcggacgaagttatcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctaggttactttacttgcggaacaggc
aaccctatcgacgattgttggagatgcgatgccaactggcacaagaaccgcaaacgccta
gcggactgtggaatcgggttcggaagaaacgcgatcggtggacgagacgggcgtttctac
gtagtcaccgacccaaatgacgacaacccggttaaccctagaccggggacactacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgcgacatggtgattcagcta
aaacaagagctgatcgtcaacagcttcaaaacgatcgacggacgcggcgcaaacgttcac
atcgctaacggcggttgcatcacgattcagtacgtgacgaacgtcatcgtgcatgggttg
catattcatgactgtagaccgacgggtaacgctatggtgagaagctcagagacgcacttt
gggtggaggactatggcggatggtgacgcgatttcgatctttggatcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgctgttatgggctcg
acggcgattaccatctctaacaaccatatgactcatcataacgaggttatgttgctcgga
catagtgattcttacacgagggataaagctatgcaagttactattgcttataaccatttt
ggagtcggacttattcaaagaatgccgaggtgccgacacgggtatttccatgtcgtgaac
aatgactacactcactgggaaatgtacgcgattggtggaagcgcaaacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaagaatccctttgctaaagaggtgactaagaga
gtggacacaccggctagtcattggaaaggatggaactggagaacggaaggagatttgctt
cagaacggagcttatttcactgcttctggagccgcttcatctggtagctacgcacgtgcc
tctagcctcgcagctaaatcttcttcattggtcgcaaccattactaacgacgctggagct
ctaccttgtcgcagaggacgtcaatgtacctcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (2)   
   KEGG COMPOUND (2)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system