KEGG   Brassica rapa (field mustard): 103847447
Entry
103847447         CDS       T03449                                 
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
  KO
K03283  heat shock 70kDa protein 1/6/8
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
brp04141  Protein processing in endoplasmic reticulum
brp04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103847447
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103847447
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    103847447
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:brp01009]
    103847447
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103847447
   03009 Ribosome biogenesis [BR:brp03009]
    103847447
   03110 Chaperones and folding catalysts [BR:brp03110]
    103847447
   04131 Membrane trafficking [BR:brp04131]
    103847447
   03051 Proteasome [BR:brp03051]
    103847447
   03029 Mitochondrial biogenesis [BR:brp03029]
    103847447
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:brp04147]
    103847447
Protein phosphatases and associated proteins [BR:brp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     103847447
Spliceosome [BR:brp03041]
 Complex B
  Other components
   Prp19 complex
    103847447
 Complex C
   Prp19-CDC5 complex
    103847447
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    103847447
Chaperones and folding catalysts [BR:brp03110]
 Heat shock proteins
  HSP70 / DNAK
   103847447
Membrane trafficking [BR:brp04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    103847447
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    103847447
Proteasome [BR:brp03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    103847447
Mitochondrial biogenesis [BR:brp03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    103847447
Exosome [BR:brp04147]
 Exosomal proteins
  Proteins found in most exosomes
   103847447
SSDB
Motif
Pfam: HSP70 MreB_Mbl FGGY_C Hydantoinase_A DACNG
Other DBs
NCBI-GeneID: 103847447
NCBI-ProteinID: XP_009122774
UniProt: A0A3P6D5M4
Position
A10:20445723..20448257
AA seq 646 aa
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDSSVQSDMKLWPFKIIAGPAEKPMIVVNYKGEEKQFAA
EEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
SALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLI
ARNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDDIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEESIEQAIQWLENNQLGEADEFED
KMKELESICNPIIAKMYQGAGGEAAGMDDDAPPASGGAGPKIEEVD
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgtctggtaaaggagaaggtccagcgatcggtatcgacctcggtacgacgtactcttgc
gtcggagtgtggcaacacgaccgtgttgagatcatcgctaatgatcagggtaacaggacc
acgccttcttacgtcgccttcactgactctgagaggctcatcggtgatgccgctaagaac
caggtcgccatgaacccaatcaacaccgtcttcgatgctaagaggttgatcggtcgtcgt
tttagcgacagctctgtacagagcgacatgaagttgtggccatttaagatcatcgccgga
cccgccgagaagccaatgatcgtcgtcaactacaagggcgaggagaagcagttcgccgcc
gaggagatttcctccatggttctcattaagatgcgtgagattgctgaggcttaccttgga
gtcaccatcaagaacgccgtcgtcactgtccctgcctacttcaacgactctcagcgtcag
gctactaaggacgctggtgtgattgccggtttgaacgttatgcgtatcatcaacgagccc
accgctgctgctattgcttacggtcttgacaagaaggcgaccagcgttggagagaagaac
gtgttgatctttgatctcggtggtggtacttttgatgtctcccttcttactattgaggaa
ggtatctttgaggttaaggccactgccggagacacacatctcggtggtgaggacttcgac
aacagaatggtgaaccacttcgttcaggagtttaagaggaagagcaagaaggacattacc
ggaaacccaagagctcttaggaggttgaggacggcctgtgagagagcgaagaggactctt
tcctccactgctcagaccaccatcgagattgactctctctttgaggggattgatttctac
tctgccctcacccgtgctaggttcgaggagctcaacatggatctctttaggaagtgtatg
gagccagtggagaagtgtctccgtgatgctaagatggacaagagcaccgttcacgatgtt
gtccttgtcggtggttccacccgtattcccaaggttcagcaattgcttcaggacttcttc
aacggcaaggagctgtgcaagtctatcaaccctgacgaggccgttgcttacggtgctgcc
gtccagggagctattctcagtggtgaaggaaacgagaaggtccaagatcttctcttgctc
gatgtcactcctctctcactcggtcttgagaccgccggtggtgtcatgaccactttgatc
gcaagaaacacgacaattccgaccaagaaggagcaagtgttctcgacctactcagacaac
caacctggtgtgttgatccaggtgtttgaaggggagagagccaggaccaaggacaacaac
ctcttaggaaagtttgagctctctggaatccctccagctccacgtggtgtcccccaaatc
actgtctgcttcgacattgacgccaacggtatcctcaacgtctctgctgaggacaagacc
accggacagaagaacaagatcaccatcaccaacgacaagggtcgtttatccaaggacgat
attgagaagatggtccaggaggctgagaagtacaagtcggaggacgaggagcacaagaag
aaggtggaagccaagaacgctctcgagaactacgcgtacaacatgaggaacaccatccag
gacgagaagattggtgagaagctaccggctgcagacaagaagaagatcgaggagtccatt
gagcaggcgattcagtggttggagaataaccagttgggtgaggctgatgagttcgaagac
aagatgaaggagttggagagcatctgcaacccaatcattgccaagatgtaccaaggagct
ggcggtgaagctgcagggatggacgatgatgctcctcctgcctcaggcggtgctggccct
aagatcgaggaggtcgactaa

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Ontology (9)   
   KEGG BRITE (9)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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