KEGG   Brassica rapa (field mustard): 103858670
Entry
103858670         CDS       T03449                                 
Name
(RefSeq) tRNA wybutosine-synthesizing protein 2/3/4
  KO
K15450  tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:brp03016]
    103858670
Enzymes [BR:brp01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.282  tRNAPhe 7-[(3-amino-3-carboxypropyl)-4-demethylwyosine37-N4]-methyltransferase
     103858670
Transfer RNA biogenesis [BR:brp03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    103858670
SSDB
Motif
Pfam: TYW3 Met_10 Kelch_4 Kelch_1 Kelch_3 Kelch_5 Kelch_6 Kelch_2 DNA_methylase MTS Cons_hypoth95 Methyltransf_15
Other DBs
NCBI-GeneID: 103858670
NCBI-ProteinID: XP_009134316
UniProt: M4C9C4
Position
A03:14140806..14145679
AA seq 987 aa
MEFEKRKAATLASIRSSVTDKSPKGFLDEPILPLLETINHHPSYFTTSSCSGRISILSQP
KPQSTTNPSSKKKARGGSWLYITHDPADPESVLHLLFSPPSEPLDQPSELVFRFEPLIIA
VECKDVRSAQFLVATAISAGFRESGITCCGEGKRVIIAIRCSIRMEVPLGDTGKVMVSRE
YVRFLVDVANEKMVANRKRTDGFGFALLSNGFKNPDDANDVDEEDNFENLAENHESSISN
GDLLPGPHQDLMPLSTISITGESVEKLHIWGHSACTINKTDRKEVIVFGGFGGFGRHARR
NESMLLDPSGGTLKLITVHESPSPRLGHTASMVGDYMFVIGGRADPLNILNDVWMLDISK
CEWSLQRCIGCEFPPRHRHAAAKIGSNVYIFGGLNQDKILSSLHILDTKNLQWKEIEQRG
PWPCARHSHDMVAYESQLFMFGGYNGEKVLDDLYSFDVQSCSWKLEMVSGKWPQARFSHS
MFVYKHVIGIIGGCPVSRNCHDLVLLDLKHRLWRSVRLDFMNKELLVRSTASVIGDDLIV
IGGGAACYAFGTKFSEPVKINLLQSLTMSGNDVEASIQVKTEASLSQPCVIQLERKYAKL
GKDILKNFGWLDLERKVYSHEKGLYICFPVTEKFSALFHEKQLLDKDLGGSEDNHLTSQL
TKGLSLKEISSSVALNLLKEVGARKFTNVAVEAKKVAKSPLQRMKEAVTSILKQKGLPEE
LLDELPQKWERLGDIVVLPVTSFKDPAWSSISEEVWSAVAISLSANRLTRQGRVEANGTR
DSTLEILVGDDGWVDHRENGILYSFNATKCMFSWGNLSEKLRMGNVACENEVVVDLFAGI
GYFTLPFLVRAKAKLVYACEWNPHAIEALRHNIEANFVSDRCIILEGDNRINAPKGVADR
VCLGLIPTSEGSWITAIQALRPEGGILHVHGNVKDSDVSSWSEHVSKSLSDIARAEGRSW
EVTVEHIEKVKWYAPRIRHLVADVRCR
NT seq 2964 nt   +upstreamnt  +downstreamnt
atggaattcgagaagaggaaagccgcgacgctagcctcaatccgctcatcagtaaccgac
aagtctccaaaaggcttcctcgacgagcccatcctccctctcctcgaaaccatcaaccac
cacccttcctacttcaccaccagctcctgctccggtcgaatctccatcctctcccaaccc
aaaccacaatccacaacaaacccttcatccaagaagaaagctcgcggcggctcgtggctc
tacatcacgcacgatccggcagatccggagtcagtactccacctcctcttctccccaccg
tcggaaccacttgaccagcccagcgagttagtcttccgattcgagccgttgatcatcgcg
gtggagtgcaaggacgtgaggtcggctcagtttctcgtggcgacggcgatctccgcgggg
tttagagagtcggggatcacgtgttgcggagagggtaaaagggtaattatagctataagg
tgttcgattcggatggaggtgccgttgggtgatacggggaaggttatggtgtcgcgggag
tatgtgaggtttcttgtggacgttgcgaatgagaagatggttgctaataggaagaggact
gatgggtttggttttgctttgttaagtaacggtttcaagaatccagatgatgctaatgat
gtggacgaggaggataatttcgagaatctagctgagaatcatgagtcgagcatcagcaat
ggtgacttgcttcctgggcctcatcaagatcttatgccgctctcaacaatatccatcacc
ggggaatctgttgagaagcttcacatttggggacattcagcttgtactataaataaaaca
gaccggaaagaagttattgtgtttggtggctttggcggttttggtagacatgctcgaaga
aacgagtctatgttgcttgacccttcaggcggcaccttaaagttaatcacagtccatgaa
tctccatcgccacgactcggacacacagcttcgatggtcggcgattacatgtttgtgatt
ggtggaagagctgatcccttgaatattctgaatgatgtgtggatgcttgatatatctaag
tgtgagtggagcttacagagatgcattggatgtgaatttcctccgaggcatcgtcatgca
gcagccaagattggctcaaatgtatacatatttggggggcttaaccaggataagatacta
tcctcgttgcacattttggacacaaagaaccttcagtggaaagaaattgaacagagaggt
ccatggccctgtgcgcgccattctcatgatatggttgcatatgagtctcagttattcatg
ttcggaggatacaatggtgaaaaggtactagatgatctatatagttttgacgtccaaagc
tgttcttggaaactcgaaatggtttcaggaaaatggcctcaggccaggttctcacactcg
atgtttgtgtataaacatgttattggcataattggaggctgccctgtttcacgaaactgc
catgatttggttctgctagatctgaagcaccggttgtggaggagtgtgagactggacttt
atgaacaaagagttattagttcgaagtacagctagtgtgattggtgatgatcttattgtt
attgggggtggagctgcttgctatgcttttgggacaaagtttagtgaaccagtgaaaatc
aacttgcttcaatcattgactatgagtggaaatgatgttgaggcttctatacaagtgaag
actgaagcttctctgtctcaaccctgtgtcatacagttagaaagaaagtatgcaaagttg
ggcaaggacatacttaaaaactttggatggttagaccttgagaggaaagtttattcacac
gagaaaggtctttatatctgcttccctgttacagaaaagttctctgccctcttccatgaa
aagcagcttttggacaaggatttaggagggtcagaagataatcaccttaccagccagctc
acaaagggtctatcactgaaggaaatatccagctctgtggctttgaatctgttaaaggaa
gttggtgctagaaaattcactaatgtagctgttgaagccaaaaaagtagcaaagtcccct
ttacaaagaatgaaagaagctgttacgtctatacttaaacagaaaggtctacctgaggag
cttttggatgagcttccacagaaatgggaacggcttggagatattgttgtacttcctgta
acatcttttaaagatccagcttggagctctataagtgaggaagtttggtctgctgttgct
atatccctcagtgccaaccgtcttacacgccaaggacgtgtggaagccaacggtacaagg
gatagtacattggagattcttgtgggagacgatggatgggttgatcaccgtgaaaatggg
atcttgtactcttttaacgctaccaagtgcatgttctcatggggtaatctctcagaaaag
ctccgtatgggtaacgtggcctgcgaaaatgaggttgtggtggacctgtttgctggaatc
ggatactttaccctcccgttccttgtgagggcaaaggcaaagctggtatatgcttgtgaa
tggaatcctcatgctattgaagcacttcgtcataacattgaagcaaattttgtttctgac
cgttgtatcattcttgaaggggataacaggatcaatgcacccaaaggagtagctgacaga
gtctgtcttggtcttatcccgaccagcgaaggaagctggatcacagctattcaggcgtta
aggccagagggaggaatactccatgtgcatggaaacgtcaaggactcggatgtgagcagt
tggtccgagcatgtatccaaatcattaagtgatatcgccagagccgaaggtcgtagctgg
gaagttacagtagaacatatagagaaagtgaaatggtatgctcctcggattcgccatctt
gtagccgatgtgagatgcagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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