KEGG   Brassica rapa (field mustard): 103859451Help
Entry
103859451         CDS       T03449                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
brp04141  Protein processing in endoplasmic reticulum
brp04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103859451
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103859451
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    103859451
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:brp01009]
    103859451
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103859451
   03009 Ribosome biogenesis [BR:brp03009]
    103859451
   03110 Chaperones and folding catalysts [BR:brp03110]
    103859451
   04131 Membrane trafficking [BR:brp04131]
    103859451
   03051 Proteasome [BR:brp03051]
    103859451
   03029 Mitochondrial biogenesis [BR:brp03029]
    103859451
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:brp04147]
    103859451
Protein phosphatases and associated proteins [BR:brp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     103859451
Spliceosome [BR:brp03041]
 Complex B
  Other components
   Prp19 complex
    103859451
 Complex C
   Prp19-CDC5 complex
    103859451
Ribosome biogenesis [BR:brp03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    103859451
Chaperones and folding catalysts [BR:brp03110]
 Heat shock proteins
  HSP70 / DNAK
   103859451
Membrane trafficking [BR:brp04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    103859451
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    103859451
Proteasome [BR:brp03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    103859451
Mitochondrial biogenesis [BR:brp03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    103859451
Exosome [BR:brp04147]
 Exosomal proteins
  Proteins found in most exosomes
   103859451
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl FGGY_C Hydantoinase_A
Motif
Other DBs
NCBI-GeneID: 103859451
NCBI-ProteinID: XP_009135236
Position
A3
AA seq 652 aa AA seqDB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPTNTVFDAKRLIGRRFSDPSVQADMRHWPFKVISGPAEKPMISVNYKGEEKQFSA
EEISSMVLTKMREIAEAYLGTSIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRINNEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSNVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNALENYAYNMRNTIKDEKIASKLEAADKKKIEDAIDQAIEWLDGNQLAEADEFED
KMKELESVCNPIIARMYQGGAGGDMGGGPGGMDDDVPAGGSGGAGPKIEEVD
NT seq 1959 nt NT seq  +upstreamnt  +downstreamnt
atggcgggtaaaggcgaagggccagcgatcggtatcgatctcggtactacctactcttgc
gttggcgtgtggcagcatgaccgcgtcgagatcatcgccaacgatcaaggcaaccgcaca
actccttcctacgttgccttcactgacagcgagcgtctcataggcgatgctgctaagaat
caagtcgctatgaaccctaccaacaccgtctttgatgctaagcgtcttattggcagaaga
ttcagcgacccctctgtccaagcagacatgaggcactggccattcaaagtcatctccggt
ccagccgagaagccaatgatcagcgtcaactacaagggagaggagaaacagttctcagca
gaagaaatctcctccatggtcctcaccaaaatgcgcgagatagcagaagcatacctcggc
acatccatcaaaaacgctgtcgtcacggtccctgcctacttcaacgactctcagcgtcaa
gcgacaaaggacgctggagtcatctctggtctcaacgtgatgcgtatcaacaacgagcct
acagctgctgctatagcctacggtctcgacaagaaggcgtcgagtgttggtgagaagaac
gtgctgatattcgacttgggaggtggtacgttcgatgtctcgttgctgacgatcgaggaa
gggatcttcgaagtgaaggcgacggctggtgacactcacctcggaggtgaggacttcgac
aacagaatggttaaccacttcgtccaagagtttaagaggaagcacaagaaggacatcacg
ggtaacccgagagctctccgcaggctgagaacagcctgcgagagagcgaagaggactctt
tcgtccaccgcgcagacgacgatagagattgactctctctacgaagggatcgacttctac
acgaccatcacgcgcgcgaggttcgaggagctgaacatggatctcttcagaaaatgtatg
gagccggtggagaagtgtctgagagacgctaagatggataagagcaacgttcatgacgtg
gtcctcgtcggcgggtccaccaggatccccaaagtgcagcagcttctccaagattttttc
aacgggaaggagctttgtaagagtattaaccctgatgaggccgtcgcgtacggcgcggcg
gtccaggctgcgatcttgagtggggaagggaacgagaaggttcaagatttgctgcttctt
gacgtcactcctttgtctttaggtttggagactgccggtggggttatgacggttctgatc
ccgaggaacacgacgattccgacaaagaaggagcagatcttctctacttactcggacaac
cagcctggagttttgatccaagtctacgaaggagagagagctaggaccaaagacaacaat
cttttagggaagtttgagctcagcggcatccctcctgcaccaagaggtgttcctcagatc
acagtctgtttcgacatcgatgctaacggcatcctcaacgtctcagcggaagacaagact
actgggcagaagaacaagattaccatcactaacgataaagggaggctgtccaaggaggag
attgagaagatggtgcaagaagcggagaagtacaaggctgaggatgaggagcataagaag
aaggttgatgccaagaatgcgttggagaactatgcgtataatatgaggaacacgatcaag
gatgagaagattgcgtctaagcttgaggcggcggataagaagaagattgaggatgccatt
gatcaggcgattgagtggttggatgggaaccagttggctgaggcagatgagtttgaggat
aagatgaaggagcttgagtctgtttgtaatccgattattgcgaggatgtatcaaggtggt
gctggtggcgatatgggtggtggtcctggaggtatggatgatgatgttcctgctggtgga
agtggtggtgctggaccaaagattgaagaagttgattaa

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