KEGG   Brassica rapa (field mustard): 103873162
Entry
103873162         CDS       T03449                                 
Name
(RefSeq) histone deacetylase 7-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03082  ATP-dependent chromatin remodeling
brp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103873162
   03083 Polycomb repressive complex
    103873162
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103873162
Enzymes [BR:brp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103873162
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103873162
   HDAC complexes
    Sin3A-HDAC complex
     103873162
    BRAF-HDAC complex
     103873162
    REST complex
     103873162
    SHIP complex
     103873162
    MiDAC complex
     103873162
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103873162
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103873162
  Chromatin remodeling factors
   NuRD complex
    103873162
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103873162
NCBI-ProteinID: XP_009149834
Position
A06:10556161..10561051
AA seq 409 aa
MENAASLASGPDGKKRRVTYFYEPNIGDGSQRVSQQISTTHNLIRSYHLHNDMDIVRPSL
AKDSDFVQFHSPEYIACLATLTPEYVDMANKSESVAETTLELFDLDEWDTPFFPGLIDYC
RLYAGGSICAAAKLNRSEADIAINWSGGMHRAKRDEARGFGYVNDVVLGILELLKVFKRV
LYIDIGYYHGDAVQEAFYKTDRVMTVSFHESVVQCRGDITDNGVEKGEYYSLNAPLKNGL
DDASFVNLLVPVIHKAMEVYQPEAIVLQCGPDSLAGDALGKFNLTIEGHGACLGYIRSFN
VPLMLLGGQGHTLGNVARCWCYETAVAVGKVIDDDLDTNVSDACFAPGYQLHIEPNRMKN
LNTDEYIAKIKKTLLNQLSQVIHAPSVQFQDTPPISQVTEAVEEDMETR
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggagaatgcggcgagcttggcttcgggtcccgacggaaagaaacggcgcgtgacctac
ttctacgagccaaacatcggcgacggcagtcaacgggtatcccaacagatcagtacgact
cacaacctcatccgcagctatcacctccacaatgacatggatatcgtccgccctagcctt
gccaaagattcagatttcgttcagtttcactcgccggagtacatagcatgcctcgctact
ctcacgccggagtatgtcgacatggctaataagtcagaaagcgtagccgaaactaccctc
gagctcttcgacttagacgagtgggacacccctttcttccctggcctcatcgattattgc
cgtctctacgccggtggttctatttgcgccgccgcgaaactgaaccgaagcgaagctgat
atcgccatcaattggtccggcgggatgcaccgcgccaagagagatgaggctcgtggcttt
ggctacgtcaacgacgttgttcttgggatcctcgagttgctcaaagtcttcaagcgagtt
ctctacatagatattgggtattaccatggggatgcagtacaagaagcgttctacaaaact
gatagagttatgactgtttctttccacgagtctgtggtccaatgcagaggagacataaca
gacaacggggtagaaaagggagaatactattctctaaatgctccgctgaagaatggtttg
gacgatgcaagtttcgtcaatttattggtacctgtcatccacaaggctatggaggtttat
cagccggaagcaattgttcttcagtgtgggcctgattcactagctggtgacgcgttgggt
aaattcaacttgactatcgagggtcatggtgcttgtctcgggtacataagatcatttaat
gttcctctcatgctcttgggtggtcaaggtcacactcttggaaatgttgcacgttgctgg
tgctatgagacagcagttgcggttggaaaagtaattgacgacgatctcgataccaatgtc
tccgatgcgtgttttgccccaggttatcaacttcatattgagccgaaccgcatgaagaat
ttaaacacagacgaatatattgcaaaaataaagaagacattactaaaccaactttcgcaa
gtgatacacgcacctagtgtgcagtttcaagacactccaccaatcagtcaagttacagaa
gcagtggaagaggacatggagacgagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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