KEGG   Brassica rapa (field mustard): 103873164
Entry
103873164         CDS       T03449                                 
Name
(RefSeq) histone deacetylase 7
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03082  ATP-dependent chromatin remodeling
brp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103873164
   03083 Polycomb repressive complex
    103873164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:brp03036]
    103873164
Enzymes [BR:brp01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103873164
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103873164
   HDAC complexes
    Sin3A-HDAC complex
     103873164
    BRAF-HDAC complex
     103873164
    REST complex
     103873164
    SHIP complex
     103873164
    MiDAC complex
     103873164
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103873164
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103873164
  Chromatin remodeling factors
   NuRD complex
    103873164
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103873164
NCBI-ProteinID: XP_018515014
UniProt: A0A397Z5D9 M4DNI6
Position
A06:10566249..10568590
AA seq 399 aa
MASLASGPDGTKRRVSYFYEPTIGVGNGRESQQIRTTHNLIGSYYLPRYMDIIRPRAAQP
SDFTKFHSPEYISFLSSVTRRLKSATDPSFKRFNLDAWDSPVFIGLFEYCRLYAGGSICA
AEKLNRHEADIAINWSGGMHRAKIDKACGFGYVNDVVLGILELLKVFKRVLYIDIGYHHG
EAVQEAFHKTDRVMTLSFHNSGDQRRGDITDYGVGKGEYYSLNAPLKNGLDDASFTTLFV
PIIGKAMEVYQPEAIVLLCGPDSLSGDALGKFNLTVKGHGACLGYIRTFNVPLMLLGGQG
HTLGNVARCWCYETGIAVGKELNDDCPMIADDDCFAPDYKLHIEPNHMENLNTDGDIEKI
KKTLLKQLSQVIHAPSVQFQDTPPISQVTEEAEEDMETR
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggcgagcttggcttcgggtcccgacggaacgaaacggcgcgtgagctacttctacgag
ccaacgatcggagttggaaatggacgagaatcccaacagatccgtacgactcacaacctc
atcggcagctattacctcccccgctacatggatatcatccgccctcgcgctgcccagcct
tcagatttcactaaattccactcgccggagtacatatcattcctcagctcagtcactcgc
cggttgaaatccgcgacggatccttccttcaagcgcttcaacttagacgcgtgggactcc
cctgtcttcattggcctcttcgaatattgccgtctctacgccggtggttctatttgcgcc
gccgagaaactgaaccgacacgaagctgatatcgccatcaattggtccggcgggatgcac
cgtgccaagatagataaggcttgtggctttggctacgtcaacgacgttgttcttgggatc
ctcgagttgcttaaggtcttcaagcgagtactctacatagatattggctatcaccatggg
gaagcagtacaagaagcattccacaaaactgatagagttatgactctttctttccacaac
tctggggaccaaagaagaggagatataacggactacggggtaggaaagggagaatactat
tctctaaatgcaccactgaagaatggtctggacgatgcaagtttcaccactttatttgta
cctattatcggcaaggctatggaggtttatcaaccagaagcaattgttcttctgtgcggc
cctgattcattatctggtgatgcgttgggtaaattcaacttgactgtcaagggtcatggt
gcttgtctcgggtacataagaacatttaatgttcctctcatgctcttgggtggtcaaggt
cacactcttggaaatgttgcacgttgctggtgctatgagacaggtattgcggttggaaaa
gaactcaacgacgattgccctatgattgcggacgacgattgttttgccccagattataaa
cttcatatcgagccaaaccacatggagaatttaaacacagacggagatattgaaaaaata
aagaagacattactaaagcaactttcgcaagtgatacacgcacctagtgtgcagtttcaa
gacactccaccaatcagtcaagttacagaagaagcggaagaggacatggagacgagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system