KEGG   Bradyrhizobium amphicarpaeae: CIT40_14115
Entry
CIT40_14115       CDS       T05700                                 
Name
(GenBank) Rne/Rng family ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
brq  Bradyrhizobium amphicarpaeae
Pathway
brq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CIT40_14115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brq03019]
    CIT40_14115
   03009 Ribosome biogenesis [BR:brq03009]
    CIT40_14115
Enzymes [BR:brq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     CIT40_14115
Messenger RNA biogenesis [BR:brq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CIT40_14115
Ribosome biogenesis [BR:brq03009]
 Prokaryotic type
  rRNA processing factors
   CIT40_14115
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 zinc_ribbon_9
Other DBs
NCBI-ProteinID: AWM01057
UniProt: A0A2U8PT89
Position
complement(3425553..3428612)
AA seq 1019 aa
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSQGRRRSRHRNSR
RRGHGERVRSEIVEGTDSTAQPVEGEALLTEGASHEGEHLHADAEHQGEHDHHEHGHHDH
HDHDHEEHAHDHHAHGDDHAHDHDHGHDHHEHHHVDETPAPVAAVGAEPVVAAEPQEAQT
FEAHASESHETHAEDLAEAVTASTEPADAVYGEAPHAEAAETTGEDDEDEDEDDEEAEEE
VVESVGGDDVLEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLA
GRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPEIKR
DFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGEAGYREARD
FMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSID
VNSGRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKL
SDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTDPCPHCGGTGHVRSVSSVALQL
LRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVTLSVIADPSVSGPQA
YLIDRGEQVHTLEAAKALLAAQAAASPPPLAEEAFDDEDGFDIETESEVETEESEGLAEE
AAGEAGSEQDGQRRKRRRRRRGRGGQRDGELREDSPATLPEPAIAAGEGDEDADTEQEGE
EGEEQAARGEQQGSADRRRRRGRRGGRRRRGSGEEGLAGSIGDELGTSQPSEASDAVADF
DGFGSEAAPSIAQAEHTAEPQVSQPEPRAEVQTEVAPAQPEPVAAEEEPADDKAARRRST
VREKVSFLSSSPSEPTAPVAQAPEPATPPAAEPAQEPASETPAAPRRAGWWSRRFGGGE
NT seq 3060 nt   +upstreamnt  +downstreamnt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaacttcgcgga
aatatctacctcgccaaggtcacgagggtcgaaccctcgctccaggccgctttcgtcgaa
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactattatcag
atcccggtcgccgaccggcaggcgctgatcgaggccgaggaacaggcccatcgcgaggcc
gaggaagagagcgagaaccgctcccagggccgccgccgctcgcgccaccgcaactcccgc
cgccgcggtcatggcgagcgcgtccgcagcgaaatcgttgaaggcaccgattccacggcc
cagccggtcgagggcgaggccctgctcaccgaaggcgcgtcgcacgaaggcgagcatctg
cacgccgacgcggagcatcagggcgagcacgatcaccacgaacatggccatcatgatcac
cacgatcatgaccacgaagaacacgcgcacgaccatcatgcccatggcgacgatcacgcg
catgatcatgaccatggccacgatcatcacgagcatcatcatgtcgatgagacccccgcg
cctgtcgccgccgtcggcgccgagcccgtggttgctgccgaaccgcaggaggcccagacc
ttcgaggctcacgcctccgagtcccacgagacgcatgccgaagatctcgccgaggccgtg
accgcttcgactgagccggccgacgccgtctacggcgaggccccgcatgccgaggctgcg
gaaacgaccggcgaagacgacgaggatgaggacgaggacgacgaggaagccgaagaggaa
gtcgtcgaatccgtcggcggcgacgacgtgctggaggaagtgccggagcgaaccttccgc
ccgcgccgccagtacaagatccaggaagtcatcaagcgccgccaggtgatgctggtgcag
gtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctacctctcgctcgcc
ggccgctatgccgtactgatgccgaacaccgcccgcggcggcggcatcagccgcaagatc
accagcgctcaggaccgctcgcgcctgaaggaagtggtgcaggatctggacgtgccggag
ggcatgggcatcatcttgcgcaccgccggcgccgcccgcaccaagcccgagatcaagcgc
gacttcgaatatctgatccggatgtgggaaacggtgcgcgacctgacgctgaagtcgcag
gccccgaccctcgtctacgaggaaggctcgctgatcaagcgctcgctgcgtgacctctac
aacaaggagatcgacgaaatctcggttgccggtgaagccggctaccgcgaagcccgcgac
ttcatgaagatgctgatgcccgccaatgtcagcgcggtgaagcagtatcgcgacggccag
ccgctgttctcgcgcatgggcgtcgaaagccagctcgacgcgatgttctcgccgactgtg
cagctgcgctccggcggctacatcgtgatcaaccagaccgaggcgctggtctcgatcgac
gtcaactccggccgctcgacccgcgagcaccatatcgaggacaccgcgctcaagaccaat
ctggaagcgtccgaagaggtcgcccgccagctccgtctgcgcgacctcgccggcctgatc
gtcatcgacttcatcgacatggacgagaagcgtaacaaccgtgcggtcgagcgcaagctg
tcggattgcctgcggcaggaccgcgcgcgcatccaggtcggccgcatctcccatttcggc
ctgctcgagatgtcgcgccagcgcatccgcgccagcgtgctcgagagctcgaccgacccg
tgcccgcattgcggcggcaccggccatgtccgctcggtgtcttcggtggcgctgcagctg
ctgcgcggcctcgaagagatcctgatgaagggcgcgacccacaatctggtggtccgcacc
cgcaccgacgtcgcactctatgtgctgaaccacaagcgcggccatctgcgcgacctcgag
aacggcttcaaggtgacgctgtcggtcatcgccgatcccagcgtgtcgggaccgcaggcc
tatctgatcgaccgcggcgagcaggtgcatacgctggaggccgccaaggcgctgctcgcg
gcgcaggccgcggcgagcccgccgccgctggcggaagaagcctttgacgacgaggacggt
ttcgacattgagaccgaatccgaagtcgagaccgaggaaagcgaaggtctcgctgaagag
gccgcgggcgaggcaggttccgagcaggacggccagcgccgcaagcgccgccggcgccgg
cgcggccgcggtggccagcgcgacggcgagttgcgtgaggatagcccagccaccctcccc
gagccggctatcgcggctggcgaaggcgatgaggatgccgacaccgagcaggagggcgaa
gagggcgaggaacaggcggcccgcggcgagcagcaaggcagcgccgaccgccgccgccgg
cgtggtcgtcgcggcggacgccgtcggcgtggcagcggcgaggagggtcttgccggctcg
atcggtgacgaactcggtaccagtcagccgtcggaagcatccgacgccgtggccgatttc
gacggcttcggcagcgaggctgcgccctcgatcgcgcaggccgagcacaccgccgagcct
caggtctcgcagcccgagccgcgcgccgaggtgcagaccgaggtggcgccggcccaaccg
gagcccgttgccgcagaggaagagcccgccgacgacaaggccgcgcggcgccgctccacg
gtccgggaaaaggtgagcttcctgtcgagcagcccgagcgagccgacagccccggttgcg
caggcgcctgagccggccactccgccggcagccgagcccgcgcaggaaccggcaagcgaa
acgccggccgcgccacgtcgcgccggctggtggtcacgccgcttcggcggcggcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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