KEGG   Brachybacterium vulturis: CFK38_15900
Entry
CFK38_15900       CDS       T05108                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brz  Brachybacterium vulturis
Pathway
brz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFK38_15900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brz03400]
    CFK38_15900
Enzymes [BR:brz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFK38_15900
DNA repair and recombination proteins [BR:brz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFK38_15900
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ATG52845
UniProt: A0A291GRH9
Position
complement(3536112..3538595)
AA seq 827 aa
MASHEQHVEVDGHRLRLSNLDKVLYPATGTTKGEVIQYYHRIAPLLIPQASRRPATRKRW
VDGVGTAEKPGTVFFRKDLEDHAPDWLPRADLEHNDGISTYPLVDEPAVLVWLAQLAALE
IHTPQWRFDGDLEPAHPDRLVLDLDPGEGAGLPQCAQVASWCREILTDMGLEAYPVTSGS
QGLHLYAPLDGETTAREVSQVARRLARALEEDHPEEVISTQTRSQRAGKVLVDWSQNNGS
KTTVCPYSLRGRLRPTVAAPRTWEEIEDPDLAQLELDEVLARAEDGVDPIAPLGLASSAD
PSAAAPRDRLELYRAKRDPERTPEPVPAARAGGEAAQEALEDAEPMFVIQEHHASRLHWD
FRLQHSGVLVSWAVPKGPPLETEVNRLAVRTEDHPLEYGTFEGSIPKDEYGGGDVTIWDT
GAIEIEKWREGEEVIVVCHGAADGGLGGVPRRFAFIRTGGMGGRSRSAAAKEKAKDNWLL
HLMKDQPEAGDTNADTDTEIERGEPIAPMLATLGRRADIRDEDEWAFEMKWDGVRVIATV
AGGAVRLTSRGGKDMTATFPELAELHEAVDAALRTAGETVLDGEIVALDSRDRPSFSRLQ
QRLGLTRQRDVQRAREDVEVHVMLFDLLVRGGDSLLRRPYRERREALFAAVGATEHVQLP
HADHGDVDHAIELSQTLQLEGVMAKQESSVYQPGKRSRTWLKLKNARHQEVVVIGWRHGK
GERRGGIGSLLVAVPDAEGELHYAGRVGTGFTARDLEQIGGRLRSRARKTPPAADVPAAD
RRDAEWVRADLVGEVQHTERTEDSRLRHPVWRGWRPDKEAADVRWEA
NT seq 2484 nt   +upstreamnt  +downstreamnt
atggccagccacgagcagcacgtcgaggtcgacggccaccggctgaggctgtccaacctc
gacaaggtcctctatcccgccacgggcaccaccaagggcgaggtgatccagtactaccac
cgcatcgccccgctgctgatcccgcaggcctcccgccgccccgccacccggaagcgctgg
gtggacggcgtgggcaccgccgagaagcccggcacggtgttcttccgcaaggacctcgag
gaccatgctccggactggctgccccgtgcggacctcgagcacaacgacggcatctccacc
tatccgttggtggacgagcccgcggtgctggtgtggctcgcccagctcgccgcgctcgag
atccacaccccgcagtggcgcttcgacggggacctcgagcccgcacaccccgaccgtctg
gtcctggacctcgaccccggcgagggcgcgggactgccccagtgcgcgcaggtcgcgtcc
tggtgccgcgagatcctcaccgacatgggactggaggcgtatcccgtcacctcgggctcc
cagggcctgcacctctacgccccgctggacggcgagaccacggcccgggaggtctcgcag
gtcgcgcgccgtctcgcccgcgccctggaggaggaccaccccgaggaggtcatcagcacc
cagacccggtcccagcgcgccggcaaggtgctcgtggactggtcgcagaacaacgggagc
aagaccaccgtctgcccgtactccctgcgcggtcggctgcgccccaccgtcgccgccccg
cgcacctgggaggagatcgaggaccccgatctcgcccagctcgagctggacgaggtgctc
gcgcgcgccgaggacggcgtcgacccgatcgcaccgctcggcctcgcctcgagcgccgac
ccgtcggccgccgcgccccgcgaccggctcgagctgtaccgcgccaagcgcgaccccgag
cgcacccccgaaccggtgccggccgcccgtgccgggggcgaggccgcacaggaggcgctc
gaggacgcggagccgatgttcgtgatccaggagcaccacgcctcgcgcctgcactgggac
ttccgcctgcagcactccggggtgctggtgtcctgggcggtgcccaaggggccgccgctg
gagaccgaggtgaaccgcctcgccgtgcggaccgaggaccatccgctcgagtacggcacc
ttcgagggcagcatcccgaaggacgagtacggcggcggcgacgtcaccatctgggacacc
ggcgccatcgagatcgagaagtggcgcgagggcgaggaggtgatcgtggtctgccatggt
gcggccgacggcggtctcggcggcgtcccgcgccgcttcgcgttcatccgcaccggcggc
atgggcgggaggtcccgctccgcggcggcgaaggagaaggcgaaggacaactggctgctg
catctgatgaaggaccagccggaggccggcgacaccaatgccgacaccgacaccgagatc
gagaggggcgagccgatcgcgccgatgctcgccaccctcggccggcgcgcggacatccgt
gacgaggacgagtgggccttcgagatgaagtgggacggggtccgcgtcatcgccaccgtc
gcgggcggggcggtgcggctcaccagccgcggcggcaaggacatgaccgcgaccttcccg
gagctcgccgagctgcacgaggccgtggacgccgcgctgcgcacggcgggggagaccgtc
ctggacggagagatcgtcgccctggacagccgcgaccggccctccttctcccgcctgcag
cagcggctcgggctcacccggcagcgggacgtccagcgggcccgagaggacgtcgaggtc
cacgtgatgctcttcgacctgctggtgcgcggcggggactcactgctgcgccgtccctac
cgcgaacgtcgcgaggcgctgttcgcggcggtgggcgccaccgagcacgtgcagctcccg
cacgccgaccacggcgacgtggaccatgcgatcgagctctcgcagacgctgcagctcgaa
ggggtgatggcgaagcaggagtccagcgtctaccagccgggcaagcgctcgcgcacctgg
ctcaagctcaagaacgcccgccaccaggaggtggtggtgatcggctggcgccacggcaag
ggggagcgccgcggcggcatcggctcgctgctggtcgcggtgcccgacgccgagggagag
ctgcactacgcgggccgggtcggcaccggcttcaccgcgcgcgacctcgagcagatcggg
ggccgcctgcgctcccgcgcccggaagacaccacccgccgccgatgtgcccgccgcggac
cgccgcgacgccgagtgggtgcgggcggacctggtgggcgaggtccagcacaccgagcgc
accgaggacagccggctgcgccaccccgtctggcgcggctggcgccccgacaaggaggcc
gcggacgtgcgatgggaggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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