KEGG   Brevundimonas subvibrioides: Bresu_3108
Entry
Bresu_3108        CDS       T01291                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
bsb  Brevundimonas subvibrioides
Pathway
bsb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bresu_3108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bsb03019]
    Bresu_3108
Enzymes [BR:bsb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Bresu_3108
Messenger RNA biogenesis [BR:bsb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Bresu_3108
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 AAA_19 AAA_22 Helicase_RecD
Other DBs
NCBI-ProteinID: ADL02414
UniProt: D9QPF1
Position
3202257..3203843
AA seq 528 aa
MRVAAYAKDTRSMSTTFESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQ
TGTGKTAAFALPILHRLAENRVAPLPRTTRCLILSPTRELASQIADSFKAYGRHLGFKVA
VVFGGVKYGPQERAIQAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFV
KPIRQIVSRIPAKRQNLFFSATMPTEIGKLAGELLKEPVKVQVTPQSTTVERINQSVIHV
EQGRKRALLTEMFADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERT
LAAFKAGKLRVLVATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAIS
FVAGDEMKLLKDIEKVTRQKIPATDRRNDKSLGLLDQSIMAAGVGTKATMPDREERPRGE
GRNRNPRRDGVKKEHGGQPHRVRGKGAPNRDGARDGGRDQNRGHNGDRSITNVVPFDPLA
ADRARSAANANRPVSSNQGGEAKPEGEIRRRPRGRRPSNGGKGYVAKG
NT seq 1587 nt   +upstreamnt  +downstreamnt
atgcgtgtcgccgcatacgcgaaagacacccgctccatgagcaccaccttcgaatccttc
ggcctgaataaggccctgctgcaggccctcaccaccgagggctacaccgtccccaccccg
atccaggcccaggccattccctcggtcatgctcggcaaggacctgctgggcatcgcccag
accggcaccggcaagaccgcggccttcgccctgccgatcctgcatcgtctggccgaaaac
cgcgtcgcccccctgccccgcaccacgcgctgcctgatcctgtcgccgacgcgcgaactg
gccagccagatcgccgacagcttcaaggcctatggccgtcacctcggcttcaaggtcgcc
gtcgtcttcggcggcgtgaaatacggtccgcaggagcgcgccatccaggccggtctcgac
gtcctggtcgccacccccggccgcctgctggaccacatgcagcagaagaccctcgacctg
tcctcgaccgagatcttcgtcctcgacgaggccgaccagatgctggacctgggcttcgtc
aagccgatccgccagatcgtcagccgcatcccggccaagcgccagaacctgttcttctcg
gccaccatgccgaccgagatcgggaaactggccggcgagctcctgaaggagcccgtcaag
gtccaggtcacgccgcagtcgaccacggtcgagcgcatcaaccagtcggtcatccacgtc
gaacagggcaggaagcgcgccctgctgaccgagatgttcgccgacgacaacttcacccgc
tgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggaagct
ggcggcgtccaggccggagccatccacggcaacaagtcccagccccagcgtgaacgcacc
ctggcggccttcaaggccggcaagctgcgcgttctggtcgccaccgacatcgccgcgcgc
ggcatcgacgtggacggcgtctcgcacgtcgtgaacttcgaactgcccttcgtgccggaa
gcctatgtccaccgcatcggccggacggcgcgtgcgggtgccgacggttcggccatcagc
ttcgtcgccggcgacgagatgaagctgctcaaggacatcgagaaggtcacgcgccagaag
atcccggccaccgaccgccgcaacgacaagtcgctgggcctgctcgaccagtcgatcatg
gccgccggtgtcggcaccaaggccaccatgcccgaccgcgaggagcgtccccggggcgag
ggtcgcaaccgcaacccgcgtcgtgatggcgtgaagaaggagcacggcggccagccgcac
cgtgttcgcggcaagggtgccccgaaccgggacggcgcccgtgacggcggacgcgatcag
aaccgtggccacaacggcgaccgttcgatcaccaacgtcgtgccgttcgacccgctcgcg
gccgatcgcgcccgttcggccgccaacgccaaccgtccagtctccagcaatcagggcggc
gaagccaagcccgagggcgagatccgtcgtcgcccccgcggccgtcgcccgtccaacggc
ggcaagggctacgtcgccaagggctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (31)   

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