KEGG   Burkholderia seminalis: WJ12_10160
Entry
WJ12_10160        CDS       T04851                                 
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bsem  Burkholderia seminalis
Pathway
bsem03030  DNA replication
bsem03410  Base excision repair
bsem03420  Nucleotide excision repair
bsem03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bsem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    WJ12_10160 (ligA)
   03410 Base excision repair
    WJ12_10160 (ligA)
   03420 Nucleotide excision repair
    WJ12_10160 (ligA)
   03430 Mismatch repair
    WJ12_10160 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsem03032]
    WJ12_10160 (ligA)
   03400 DNA repair and recombination proteins [BR:bsem03400]
    WJ12_10160 (ligA)
Enzymes [BR:bsem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     WJ12_10160 (ligA)
DNA replication proteins [BR:bsem03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     WJ12_10160 (ligA)
DNA repair and recombination proteins [BR:bsem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     WJ12_10160 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     WJ12_10160 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     WJ12_10160 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      WJ12_10160 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH MctB BRCT_2
Other DBs
NCBI-ProteinID: AOJ25175
Position
1:complement(2246581..2248656)
AA seq 691 aa
MARTQAEPPASQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLETDHPE
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALDKPTDLAGS
VTEPVEYACELKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKH
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTP
NT seq 2076 nt   +upstreamnt  +downstreamnt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgtgccgcgtggctg
cgcgaccaactcgagcgggcgaaccacgcctattacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgttcctcgaactgcagcagctcgaaaccgaccatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtgggcggcgaggcggccggcggcttcacg
ccggtcgtccacgacgcgccgatgctgtcgctgaacaacggcttcgccgacgaggacatc
gtcgcattcgacaagcgtgtcgccgatgcgctcgacaagccgaccgatctcgccggctcg
gtgacggaacccgtcgaatacgcgtgcgaactgaaattcgacggtctcgcgatctcgctg
cgctacgagcagggcgtgttcgtgcaggcttcgacgcgcggcgacgggacgacgggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgttgaaactgaagggcaagcac
gtaccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgattcgaagatcaccgcgcagcgtccgctgtcgttcttc
gcgtacgggatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgagtcgctcggcctgcccgtgaaccgcgagcgcgcggtcgtgcacggcgcc
gagggcttgctcgatttcttccgcaaggtcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgttgtctacaaggtcaaccggcgcgacgagcaggagcgcctgggcttcgtg
tcgcgtgcgccgcgcttcgcgctcgcgcacaagtttcccgcacaggaagcgctgacaaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtgaccaatgcgacgctgcacaacgaggacgaa
gtgcgccgcaaggacatccggatcggcgacaccgtgatcgtgcgccgcgcgggcgacgtg
attcccgaggtggtcggcgcgctgctcgaccggcgtccggccgacgcggccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcccgctgcacgggcggcctgttctgcccggcgcaacgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagctgaatctcgtgcgcacgccggccgacctgttcaatctcggtttcgcgacgctggcc
gagctcgaccgcttcgcggagaagtccgcgcagaatctgctcgactcgctcgaaaaggcg
aagcacacgacgctggcgcgcttcatctacggcctcggcatccgccacgtcggcgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctgacgccgatcatggacgcgtcgatc
gaggaactgctcgaagtcaacgacgtcggcccgatcgtcgccgagtcgatccaccagttc
ttcgcggaagcgcacaaccggacggtgatcgagcagctgcgcgcgccgggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagacggtc
gtgctgacgggcacgctgccgaacctcacgcgcgatgccgcgaaggagatgctcgaggcg
gcgggcgcgaaggtcgcgggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggcaatacgccatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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