KEGG   Basfia succiniciproducens: A4G13_07005
Entry
A4G13_07005       CDS       T06488                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
bsun  Basfia succiniciproducens
Pathway
bsun03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bsun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    A4G13_07005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsun03400]
    A4G13_07005
Enzymes [BR:bsun01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     A4G13_07005
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     A4G13_07005
DNA repair and recombination proteins [BR:bsun03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     A4G13_07005
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zinc-ribbons_6 Zn_Tnp_IS1595 DruA DZR TF_Zn_Ribbon Zn-ribbon_8 HscB_4_cys zinc_ribbon_2 OrfB_Zn_ribbon
Other DBs
NCBI-ProteinID: QIM69155
Position
1540742..1541554
AA seq 270 aa
MPELPEVETAKNGITPYLEGYLIEKIIVRQPKLRWEVSPQLAQISQQKITALSRRAKYLI
IHTEQGYIIGHLGMSGSVRIVSARDPVDKHDHLDIVMNNGKIMRYNDPRRFGAWLWSANL
DEFHLFLKLGPEPLSDEFNAEYLFKKSRKKQTPVKNFLMDNSVVVGVGNIYANETLFMCG
LHPEKITAKLTKAQCALLVEKIKQELKRAIEQGGTTLKDFLQPDGRPGYFAQELQIYGKK
GAPCPNCGTKIESLVVAQRNSYFCPKCQKK
NT seq 813 nt   +upstreamnt  +downstreamnt
atgcctgaattacccgaagtcgaaaccgctaaaaatggtattacgccttatttagaaggt
tatctcattgaaaagattattgttcgtcagcctaaattacgctgggaagtcagcccgcag
ctggcacagatttctcaacaaaaaattaccgcactttcccgccgggcaaaatatctgatt
attcatacggaacaaggctatatcataggacatttggggatgtcgggctcggtgcggatt
gtatccgctcgggatcccgtcgataaacatgaccacttggatattgtaatgaataacggc
aaaattatgcggtataacgatcctcgccgttttggcgcctggctttggagcgccaatctt
gatgaatttcatctgtttttaaaattaggtcctgagccgctttccgatgaatttaacgcg
gaatatctgttcaaaaaatcacgcaaaaaacaaacgcccgttaaaaactttttgatggat
aattcggttgttgtgggtgtaggcaatatctacgccaatgaaactctgtttatgtgcggt
ttacatccggagaaaatcaccgccaaactgacaaaagcgcaatgtgcgttactggtggaa
aaaatcaaacaagaactcaaacgggctatcgaacagggcggaaccaccctgaaagacttt
ttacaacccgacggcagacccggttatttcgcgcaggagctacaaatttacggcaagaaa
ggtgcgccctgcccaaactgcggtacaaaaatcgaaagtttggtggtcgcccaacgaaac
agttacttctgcccgaaatgccagaagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system