KEGG   Bos taurus (cow): 615807
Entry
615807            CDS       T01008                                 
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X3
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
bta  Bos taurus (cow)
Pathway
bta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    615807 (PNLDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bta03019]
    615807 (PNLDC1)
Enzymes [BR:bta01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     615807 (PNLDC1)
Messenger RNA biogenesis [BR:bta03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     615807 (PNLDC1)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 615807
NCBI-ProteinID: XP_002690421
BGD-bta: BT20018
Ensembl: ENSBTAG00000015166
VGNC: 33082
Position
9:96061869..96090957
AA seq 531 aa
MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKE
KILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWKVHSAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FAGPDSPSIRPPILILTVRKWPGVSEQQVYREFQNLCKFDVRRLTRSQFLLMTNKFKDTR
SILKEYRCHPTLRISLYRYWRHSPDINCLLQVCSVITTWAFIAFLLGGAGL
NT seq 1596 nt   +upstreamnt  +downstreamnt
atggacataggcgccgatgagtttgagcagagcctccctctgctgcaggagctcgtcctg
ggtgcggacttcgtgggtctggacatagagttcacgggccttcgttctaacctgtctggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
gttcagcagttcaccatctgtcagatcggattgtctgtgttctccagtattgaaggcgag
tcgaacaagtatgtagctcattcatgtaacttcttcctcttccctacgacatttggggtt
ttggactcagagttctctttccaggcttccagtgttcagtttttgaaccagtatggcttc
gactataacaagtttctcaaaaatgggatcccctatatgaacgaagaacaggagaagaaa
attaagcacaacattctgactgggaactggaaagttcgcagctctctggacaaagaccag
atcaaggtggtgattgacgaggtgacgcgctggctggacctggcggaggaaggggactgg
atgaccctccctggtattgctggcttccaggccttcgaggtccagctcgtactgaggaag
gccctccctgacatctggacggtgctgagagaccaaggggtgattgtgaagaaggtgagt
acgcagcaccgctggtatcttgagaccacctcctgtgatcgagagagctgctggaaggag
aagattcttctctctgcaaggggcttttctgtgtttttccagatgctggtgaaagcccgg
aagcccttagtgggacataacatgatgatggatctgctgcatctccatgagaagttcttc
agacctctcccagaaagctacgatgagtttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctgaacagtgacttgaaccccaccaagaactct
gggccagtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccac
gaagcggcatacgacgccttcctgtgcgggtcagttctgttgaaagtggcgcacctgctc
ctgtggaaggtacacagcgctgttcccatccccgagcccagcttcccgctctacctggac
gtgctggctccctacgtgaaccaggtgaatcttatccgagccggggtccccaaaatcaac
tttgcgggcccagactcccctagcatccgcccccccatcctcatcctcaccgtcaggaag
tggcctggggtcagcgagcagcaggtctaccgcgagtttcagaacctctgcaaatttgac
gtcaggaggctcacgcggagccagttcctgctcatgaccaataagttcaaggacacgcgg
agcatcctgaaggagtacaggtgccacccgacactgcggatctccctgtaccgctactgg
agacactccccggacatcaactgcctgctgcaagtctgcagcgtcattaccacctgggcc
ttcattgcgtttctcctgggaggagctggcctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   BGD-BTA (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (32)   

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