KEGG   Bacillus thuringiensis serovar finitimus YBT-020: YBT020_18185
Entry
YBT020_18185      CDS       T01839                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
btf  Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf02024  Quorum sensing
btf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:btf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YBT020_18185 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    YBT020_18185 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btf03019]
    YBT020_18185 (hfq)
   03036 Chromosome and associated proteins [BR:btf03036]
    YBT020_18185 (hfq)
Messenger RNA biogenesis [BR:btf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     YBT020_18185 (hfq)
Chromosome and associated proteins [BR:btf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    YBT020_18185 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ADY22865
Position
complement(3558945..3559169)
AA seq 74 aa
MKQSINIQDQFLNQLRKENTFVTLYLLNGFQLRGLIKGFDNFTVLLETEGKQQLIYKHAI
STFVPQKNVSIELE
NT seq 225 nt   +upstreamnt  +downstreamnt
atgaagcaatcaatcaatattcaagatcagtttttaaatcaactccgtaaagagaatacg
tttgttacgctgtacttattaaatggtttccagcttcgtggattaattaaaggatttgat
aattttacagtcctactggaaacagaaggtaagcaacagcttatttataaacatgcaatt
tctacatttgtaccacaaaaaaatgtttcaattgaattagaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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