KEGG   Bacillus thuringiensis serovar finitimus YBT-020: YBT020_21720
Entry
YBT020_21720      CDS       T01839                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
btf  Bacillus thuringiensis serovar finitimus YBT-020
Pathway
btf03410  Base excision repair
btf03430  Mismatch repair
btf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:btf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    YBT020_21720
   03430 Mismatch repair
    YBT020_21720
   03440 Homologous recombination
    YBT020_21720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btf03400]
    YBT020_21720
DNA repair and recombination proteins [BR:btf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     YBT020_21720
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     YBT020_21720
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      YBT020_21720
SSDB
Motif
Pfam: ssDNA-exonuc_C RecJ_OB DHH DHHA1 PhoU DUF5368
Other DBs
NCBI-ProteinID: ADY23572
Position
complement(4226725..4229064)
AA seq 779 aa
MLQPKTRWKEKEYNSERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDP
FLLEGMDRTVERVNKAIQNGEQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFT
EGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKELGIDLIITDHHEPPPELPEAL
AIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLL
SEDPEEAKELAEEIDELNKLRKDIVKQITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVI
GIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLFANLSDCRELLPHFGGHPMAA
GMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQATLDTIGFGFGAYAKEISPVAKVSV
IGEASINEWNNFKKPQLMVQDIAVEAWQLFDWRSMRNVEANLAELPKEKITMLYFSKEVL
NKFSLEDYKEHMMHASEVTELDEQYIVLLDLPKGTDELRDLFKVGFPSRIYTLFYQENNH
LFSTVPTRDHFKWYYSFLSQKSPFSLRQYGEQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG
NT seq 2340 nt   +upstreamnt  +downstreamnt
gtgttacaaccgaagacgcgttggaaagaaaaagaatataatagcgagcgagtgagtgaa
ttagcaagtaaattacaattatcaccacttgtcgtttcgttattcctcggtagaggacta
gatacagaagataagattttagattttttaaatacagaaaatcaagaatttcatgatcca
tttttattagaaggaatggatagaacggtagaacgtgtaaataaggcgattcaaaatgga
gagcaaatattaatatttggtgactacgatgcggacggagtaagtagtacaactgtttta
tatattgccttacaagaattaggtgcagacgtagaattttatatcccaaaccgttttaca
gaaggttatggaccgaatgaagaagcatttcgttgggcgcatagcgcaggattttcactc
attattactgtcgatactggtatcgcagctgtacatgaagcgaaggtagcgaaggaactt
gggatagatctaattattacagatcaccatgagccaccaccagaattgccagaagcactt
gcgattattcacccgaaattagatggcggtgtgtatccgtttcactatttagcgggcgtt
ggtgttgcgtttaaagttgcacatgcactactgggccgtgtaccagaacatttattagaa
attgcagtaattggtacggtagccgatttagtatcacttcacggtgagaatagattgcta
gtgaagcgcggtttaaaacatatgcgcatgacgaaaaatatcggactaaaggcgctattt
aaagttgctaacgtttcgcaaagtgaaattacagaagagagcattggcttctcaatcgca
cctcgtattaatgcagttggacgtttagaagatgctacgccggctgtacatcttttatta
tcagaggatcccgaagaagcgaaagagctggctgaagaaattgatgagctgaacaaactg
cgaaaagatattgtaaagcaaattacagaagaagctatcgctgaagtggaaacgaatttc
cctcctgaagacaataaagtattagtgcttgcaaaagaaggatggaatccaggtgtaatt
ggaattgtcgcttctaaattagtggaacgtttttatcgtccaacgattgtattatgcatt
gatcctgtaaaagaaactgcaaaaggttcagcgcgtagtattgcaggatttgatttgttt
gcaaacttgtcagattgtagagagttattgccgcacttcggaggacatccgatggcagcg
ggaatgacgctacatatgaatgatgtagatgaattacgccgccgtttaaatgaacaagca
gatacaattttaacagaagaagattttattccaattacagctgtcgatgctttttgcaaa
gtggaggacgtaacacttgcagcaattgaagatatgcaaaagttagcgccatttggtgtt
ggaaatccaaagccacgtattgcagtgaaagatgcggagttagaaagtattcgtgcaatc
ggatcagatggttctcatttaaagatgtctcttcgtgatggacaagcaacattggataca
attggattcggttttggtgcgtacgcgaaagaaatttctccagttgcaaaagtctctgta
attggggaagcgtctattaatgaatggaataattttaagaagccgcaattaatggtgcaa
gatattgctgtagaggcatggcaattatttgattggcgtagtatgcgtaacgtagaagca
aatttagcagaacttccgaaagaaaaaatcacgatgttgtatttttctaaagaggtattg
aataaattttctttagaagactataaagagcatatgatgcatgcatcagaggtaaccgag
ttagatgagcaatacatcgtattacttgatttaccaaaaggaacagatgaattacgagat
ctatttaaagttgggttcccatcgcgaatctatacgctattttatcaagagaataatcat
ttatttagcactgttccaacgagggatcactttaaatggtactattcattcttgagccaa
aaatcaccattttctttaagacaatatggagaacaactatgtcaacataaaggttggtca
aaagatacagtaaatttcatgacacaggtgttttttgagttagaatttgttacaataaaa
gatggcgtcatttttatggcagacaaaaaacaaaagcgtgatttaattgaatcgaacaca
tatcgtgagaaaatgaaccacttacaattagaaaaagaattggtttatagcacatatcag
caactatatacatggtttgaaacgattcgtaatcataaagaagtagaacagttagggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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