KEGG T02263: MC28

Bacillus thuringiensis MC28: MC28_4361

Entry

MC28_4361         CDS       T02263

Name

(GenBank) Ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

btm Bacillus thuringiensis MC28

Pathway

btm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:btm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MC28_4361
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btm03019]
    MC28_4361
   03016 Transfer RNA biogenesis [BR:btm03016]
    MC28_4361
Enzymes [BR:btm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     MC28_4361
Messenger RNA biogenesis [BR:btm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     MC28_4361
Transfer RNA biogenesis [BR:btm03016]
Prokaryotic type
  tRNA degradation factors
   MC28_4361

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 OB_Dis3

Other DBs

NCBI-ProteinID:

AFU15783

Position

complement(4221653..4224085)

AA seq 810 aa
MEEIIQENIDKLLLFMREEAYKPLTIQELEEAFGIEGSEGFKDFVKALVMMEEKGLVIRT
RSNRYGLPEKMNLVRGKLIGHARGFAFVVPEEKKTGDDDLFIPPTELNGALHGDTVLARL
SSQSSGSRQEGSIVRILERGTKELVGTYTESKNFGFVIPDNKRWTSDIFILKSASMGAVE
GHKVVVKITSYPENRLSAEGEVIQILGHKNDPGVDILSVIHKHHLPLAFPEEVMEHANSV
PETISEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEE
GSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKH
EIFQSVIKTTERMTYADVRSILEDEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAI
DFDFKEAKVLVDEEGKPTDVVMRDRSVSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE
DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA
RYDSESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIREYVINGKVDSETQAKWRENLPEI
AEHSSNMERRAVEAERETDEMKKAEYMVDKIGEEYDGMISSVTNFGLFVELPNTIEGLVH
VSYLTDDYYRYDEKHFAMIGERTGNVFRIGDEITIRVINVNKDERAIDFEIVGMKGTPRR
KFKDRPVVIEQPRTGRKKRGGRSERSNERGGERGTGRKFDRGGKGKSTGRGSASASTSAS
QPGKKDGNGKKKKGFFENVPGFKKKKKKRK

NT seq 2433 nt +upstreamnt +downstreamnt
ttggaagaaatcatacaagaaaatattgataagttgttattatttatgagagaagaagcg
tataaaccgttaacgatacaagagttagaagaggcatttggaattgaaggttctgagggc
tttaaagattttgtaaaggcacttgtaatgatggaagagaagggacttgttattcgtaca
cgtagcaatcgttatggtcttcctgaaaagatgaatttagtgcgtggtaagttaattgga
catgcgcgtggctttgctttcgttgtgccagaagagaagaaaacgggagatgatgatctt
ttcattcctcctacagaattaaacggtgcacttcacggtgatacagtattagcacgccta
agttcacaatcaagtggttcacgtcaagaaggttcaattgtacgcattttagaacgtgga
acgaaagaactagttggtacatatacagaatcgaaaaactttgggtttgttatacctgac
aataagcgttggacaagtgatattttcatcttgaaaagcgcatccatgggtgctgtagaa
ggccataaagtagttgttaaaattacgagctatccagagaatcgtttaagtgcggaaggt
gaagttattcaaattttaggtcataaaaatgatccaggagtagatattttatcggtcatc
cataaacatcatttacctttagcatttcctgaggaagtgatggagcatgcaaacagtgta
ccagaaacgatttcagaagaagacttgaaagatcgccgtgatttacgtgaccaaatgatt
gtaacgattgatggtgcagacgcgaaggacttagatgatgctgttacagtaacgaagctt
gagaacggtaattacaagcttggtgttcatattgcggatgtaagtcattacgttgaagaa
ggttctccaattgatgttgaagcagcggaaagagcgacgagtgtatatcttgttgatcgt
gtaattccaatgattccacatcgtctatctaacggtatttgttcattaaatccgaaagta
gaccgtctgacactgtcttgtgaaatggaaatcaacaacttaggtgatgttgtcaaacac
gagattttccaaagtgtgattaaaacgacagagcgtatgacatatgctgacgtaagaagc
attttagaagatgaggacgaagagttaatcaagcgctatgaaccgttagtaccaatgttt
aaagagatgggccaattggcacaaattttacgtgaaaagcgtatgcgccgtggtgcaatc
gactttgactttaaagaagcaaaagtattagtagatgaagaaggaaaaccgactgatgtt
gtaatgcgtgatcgttctgtatcagaaaagttaattgaagaatttatgcttgttgcgaac
gaaacagtagcagaacacttccactggatgaacgtaccattcatgtaccgtgtccatgaa
gatccgaaagaagataagttagagcgattcttcgagtttgtaacgaacttcggatatgcg
gtaaaaggacgtgcgaatgaagtacatcctcgtgcattgcaacaaattcttgaaatggtt
caaggacagcctgaagaagtagtaatttcaacggttatgcttcgttctatgaagcaagca
cgttacgattcggaaagcttaggacatttcggcttatcaactgagttctacacgcatttc
acatcgccgattcgtcgttatccagatacgatcgttcatagattgattcgtgaatacgtc
attaacggtaaagtcgacagtgaaacacaagcgaaatggcgtgaaaacttaccagagatt
gcagagcactcttctaatatggaacgtcgtgctgttgaagcagagcgtgaaacagacgaa
atgaaaaaagcagagtatatggtcgataagatcggtgaagagtatgacggtatgattagc
tctgtaacaaacttcggtttattcgtagagcttccaaatacaattgaaggtcttgtacat
gttagttacttaacggatgattactaccgttacgacgagaagcatttcgcaatgatcgga
gaacgtacaggtaacgtattccgcatcggtgacgaaattacaattcgtgttattaacgta
aacaaagacgagcgcgcaattgactttgaaatcgttggcatgaaaggtacacctcgccgt
aagttcaaagatcgtccagtcgttatcgaacagccaagaacaggcagaaagaaacggggt
ggacgtagcgagcgcagtaatgaacgcggtggcgaacgcggtacaggtagaaaatttgac
cgtggtggcaaaggtaaaagcacaggaagaggatcagcatcagcatccacgtccgctagt
cagccagggaaaaaagatggtaatggcaagaagaaaaaaggattctttgaaaacgtacca
ggattcaagaagaaaaagaaaaagcgtaagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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