KEGG   Bordetella trematum: SAMEA390648700026
Entry
SAMEA390648700026 CDS       T04322                                 
Symbol
uvrD_1
Name
(GenBank) DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
btrm  Bordetella trematum
Pathway
btrm03420  Nucleotide excision repair
btrm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:btrm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SAMEA390648700026 (uvrD_1)
   03430 Mismatch repair
    SAMEA390648700026 (uvrD_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btrm03400]
    SAMEA390648700026 (uvrD_1)
Enzymes [BR:btrm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SAMEA390648700026 (uvrD_1)
DNA repair and recombination proteins [BR:btrm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SAMEA390648700026 (uvrD_1)
   MMR (mismatch excision repair)
    Other MMR factors
     SAMEA390648700026 (uvrD_1)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 AAA_12 NACHT HHH
Other DBs
NCBI-ProteinID: SAI65988
UniProt: A0A157Q768
Position
1:complement(34549..36618)
AA seq 689 aa
MNSPGPDTTDPLDELNPQQRDAATHGIAPGGQPAGALLVIAGAGSGKTSTLAHRVAQLIR
HGADPQRLLLLTFSRRAALEMDRRAGAVLKRVMGLSTQAPSLPWAGTFHSIGARLLRDCA
TRIGLAESFTVHDRSDAEDLMGLLRHELGLSATQSRFPLKGTCLAIYSRVVNSEAPLADI
LAQAFPWCAQWEAELKRLFQAYMQAKQAQHILDYDDLLLYWAEMMAEPTLARELSARFDH
VLVDEYQDTNLLQARILQGLKPDGRGLTVVGDDAQSIYGFRAATVRNILDFPSRFGAHVI
TLERNYRSTQPILEASNAVIALAQERYVKALWTDRAGRHKPEMVNVSDEAGQARWVADQV
LARREEGMRLTAQAALFRTGSHSAALELELARRQIPFVKFGGLRFLEAAHIKDVLSVLRW
ADNPRSRLAGFRVAQLLPGVGPATAARLMDAMAEAPDPQACLAGFRKSPPWQALAQLFGA
LRSGQARWPADLELALQWYAPWLEERYDDARARQADLQQLARLAGGYPSRERFLTELTLD
PPSATSAESGKPLLDEDYMILSTIHSAKGQEWRAVYLLNAVDGCLPSDMATGRSDDIEEE
RRLLYVAMTRARERLQIIVPQRFYVSTQAGMGDRHVYAARSRFLPDGLMPLFEHLPKPPP
LPHGRAAPAEGGVPPAPIDVGGRLRRLFS
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgaattccccaggccccgacacgaccgatccgcttgacgaactgaacccccagcagcgc
gacgccgccacccatggcatcgcccccggcggccaacccgccggcgcactgctggtgatc
gctggtgcaggctcgggcaagaccagcacgctggctcaccgcgtggcgcagctcatccgc
catggcgcggatccgcagcgcctgctgctgctgaccttctcgcgccgcgccgccctcgaa
atggatcgccgggcgggcgcggtgctcaaacgggtcatgggcctgagcacgcaagccccg
tcgctgccgtgggcaggcaccttccacagcattggcgcacgcctgttgcgcgattgcgcc
acgcgcatcgggctggccgagtctttcacggtgcacgatcgcagcgatgccgaagacctg
atggggctgttgcgccacgagctcggcctgagcgccacgcaaagccggtttccgctcaag
ggtacctgtctggcgatctactcgcgcgtggtcaacagcgaagcgccgctggccgacata
ctggcgcaggcctttccatggtgcgcgcaatgggaggccgagctcaagcgcctgttccag
gcctatatgcaggccaaacaggcccagcacatcctggattacgacgacctgttgctgtat
tgggccgagatgatggccgagccgacgctcgcccgcgagttgtcggcgcgctttgatcat
gtgctggtcgacgaataccaggacaccaatctgctgcaggcccgcatcctgcaggggctc
aagcccgatggccgcggcctgaccgtggtgggcgacgatgcacaatcgatctacggtttt
cgcgctgccaccgtgcgcaacatcctggattttccgtcccgtttcggtgcccatgtgatc
acgctggagcgcaactatcgcagcacccagccgattctggaggcgtccaacgctgtcatt
gccctggcccaggagcgctacgtcaaggccctgtggaccgatcgcgccggccgccacaag
cccgagatggtcaatgtcagcgacgaggcgggccaggcgcgctgggtggccgatcaggtc
ctggcgcgccgcgaggagggcatgcgcctgaccgcgcaggcggcgctgtttcgtaccggc
agccacagtgcggcgctcgaactggagctggcacggcgccagattcccttcgtcaagttt
ggcggcctgcgctttctcgaggccgcgcacatcaaggacgtgctgtctgttctgcgctgg
gccgacaatccgcgctcgcgcctggcgggcttccgggtggcgcaattgctgccgggtgtg
ggcccggccacggccgcccggctgatggacgccatggccgaggcgccggatccccaggcc
tgtctggccgggttcaggaaaagcccgccctggcaggcgctggcgcagctgttcggcgcc
ttgcgcagcggccaggcgcgctggcccgctgacctggagctggcgctgcagtggtatgcg
ccgtggctggaagagcgctacgacgacgcgcgcgcccgccaggccgatctccagcagctg
gcccggctggccggcggctatccgagccgcgaacgtttcctgaccgagttgacgctggat
ccaccctcggccaccagtgccgagtcgggcaagcccctgctcgacgaagactatatgatc
ctgtccaccattcattcggccaaaggccaggaatggcgcgccgtctacctgctcaatgcg
gtggatggttgcctgccttcggacatggcgacgggccgcagcgacgacatcgaagaagag
cgccgtctgctctacgtcgccatgacgcgcgcccgggaacgcttgcagatcatcgtgccg
caacgcttttacgtcagcacccaggccggcatgggtgaccgccatgtctacgcggcgcgc
agccgctttctgcccgacgggttgatgcccctgttcgagcatctgcccaaaccgccgccg
ctgccccatggccgggccgctccggccgaggggggcgtgccgcctgcgccgatcgacgtc
ggcgggaggctacggcggctgttctcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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