KEGG   Bordetella trematum: SAMEA390648702554
Entry
SAMEA390648702554 CDS       T04322                                 
Symbol
ams
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
btrm  Bordetella trematum
Pathway
btrm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:btrm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAMEA390648702554 (ams)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:btrm03019]
    SAMEA390648702554 (ams)
   03009 Ribosome biogenesis [BR:btrm03009]
    SAMEA390648702554 (ams)
Enzymes [BR:btrm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SAMEA390648702554 (ams)
Messenger RNA biogenesis [BR:btrm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SAMEA390648702554 (ams)
Ribosome biogenesis [BR:btrm03009]
 Prokaryotic type
  rRNA processing factors
   SAMEA390648702554 (ams)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP
Other DBs
NCBI-ProteinID: SAI70941
UniProt: A0A157N3A6
Position
1:complement(2686355..2689498)
AA seq 1047 aa
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLSYLMQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAS
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALQ
VLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKIETRLKVNLVLIPNKHLETPH
HHLERLRHDDPRLEDSKTSFELAESPATELTWNPREQEVKPRPEALVKGITPAQPAPVST
PAPAAVAKPAESAGLGGLFKRLIQWLSGGAEAKPAEKPAEPVKRSTGNRSKRAHDGQERR
GERHGSERNRNRRNNAEGEGLEPRQVRGGRRQDERHGEARQDNRNPEQNQERQERAARKA
EAAAAPAGNRPAASESDDGQPRNGRNRRGRGRNRREDGAAPMSEQETMVAALAETVADAL
PATAAPGASQAAEPQTAPQASPAAAAKPASETADKDVNATETELADNVDADGNADPERKR
RRRRSRRGRRSQEDGVTMNADDQGNEDGTDAESPGTALVPAQAFDVTPVSEPVQVQAKAD
TQPAAAPEAAVAVAESQQPAPAAAAEPAPQAAPAEATPAVQAAPEQAVAAEVDTTPAAQA
VASDVAPAEPVEPVQVVAAPAASPEQAAPPAAATVDASVTVGAAETVTQTESEATAPAAT
REPAAAEPAPAAAAPATRSAAPIVVGEQGLQSVVQAAGLTWVQTDPSRHAESQARSATEE
KPVRLGRERKPTAQVSSQPLVQVETRD
NT seq 3144 nt   +upstreamnt  +downstreamnt
atgaagcgcatgttgtttaatgcgacgcaccaggaagaactgcgcgtcgcaatcgttgat
gggcaaaagctcatcgacctcgatatcgagaccgccgggcgcgaacagcgcaaaggcaac
atctataaaggcgtcatcacccgcatcgagccgggtctggaggcctgcttcgtcaattat
ggcgaagaccggcacgggttcctgcccttcaaggaagtggcccgcagctacttcaaggaa
ggcgtggacgtgcgcagcgcgcgcatccaggatgccctgcgcgaaggccaggaactgatc
gttcaggtcgagaaggaagaacgtggcaacaagggcgccgccctgaccactttcatctcg
ctggccggccgctacctggtcctgatgccgaacaatccgcgcggcggcggtgtttcgcgc
cgcgtcgaaggcgaagaccgccaggaactgcgcgacacgatggaacagctcgacgtgccg
cagggcatgagcatcatcgcgcgcacggccggcatcggccgcaacgtcgacgaactgcaa
tgggacctttcgtacctgatgcagctctggacggccatcgatggcgcggcacgcgacaac
gcggcccccatcctgatctacctcgagtcgagcctggtgatccgcgcgatccgcgattat
ttctcgcccgaaatcggcgagatcctgatcgataccgacgagatcgccgatcaggccagc
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctatcgtgacgat
atcccgctgttctcgcgcttccagatcgaacaccagatcgagacggcctattcgcgcacc
gtgcaactgccctcgggtggcgccgtggtcatcgaccacacggaagccctggtcgccgtc
gacgtcaactccgcccgctccacgcgcggcgccgacatcgaagaaaccgccctgcgcacc
aacctcgaagccgccgacgaagtggcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagacagcaagaaccagcgtgctgtcgaacaacgc
ctgcgcgacgccctgcactttgaccgggcacgcgtccaaatgggcaagatctcgcgtttc
ggcctgatggagctgtcgcgccagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaccggcaccggcgtgatccgcgacgccgaatccagcgcgctgcaa
gtgctgcgcctgctgcaagaagaagccatgaaggaaaacaccgcggcggttcacgcccag
gtgccggtcgatgtggccaccttcctgctgaacgaaaagcgcgccgacatcaccaagatc
gagacccgcctgaaggtcaacctggtgctgatccccaacaagcacctggagacgccgcac
catcacctggagcgcctgcgccacgacgatccgcgcctggaagacagcaagaccagcttc
gagctggccgaaagcccggccaccgagctgacctggaatccgcgcgaacaggaagtcaag
ccgcgtcccgaggccctggtcaaaggcatcacgccggcgcagccggcccccgtatccacc
ccggctccggctgcggttgccaaaccggctgaaagcgccggcctgggcgggctgttcaag
cgcctaatccaatggctgtccggcggcgccgaagccaagcccgccgagaaaccggccgaa
ccggtcaagcgcagcaccggcaatcgctccaagcgcgcccatgacggccaggagcgccgt
ggtgaacgccatggctccgagcgcaaccgcaaccgccgcaacaatgcggaaggcgaaggc
ctggaaccgcgccaggttcgcggcggacgccgccaggacgagcgccatggcgaagcccgc
caggacaaccgcaacccggaacagaaccaggagcgccaggaacgcgccgcccgcaaggcg
gaagcggcggccgccccggccggcaaccgtcccgccgccagcgaaagcgatgacggccag
ccgcgcaacggccgcaaccgccgtggccgtggccgcaatcgtcgcgaagacggcgcagca
ccgatgagcgagcaggaaaccatggtggccgcgctggcggaaaccgtcgccgacgctctg
cccgcgacggctgcgcctggcgcctcgcaggccgccgagccccagaccgccccgcaagcc
agcccggccgccgcggccaagccggcctccgagactgctgacaaggacgtcaacgccacg
gaaaccgaactggccgacaacgtcgacgctgacggcaatgccgatccggagcgcaagcgc
cgccgccgccgcagccgccgtggccgtcgcagccaggaagatggcgtgaccatgaacgcc
gacgatcagggcaacgaagacggcactgacgccgaaagccccggcaccgccctggtgccg
gcccaggcctttgacgtcacgccggtcagcgagccggttcaggtacaagccaaggccgac
acccagcccgcagccgcgcccgaggccgccgtcgcggttgccgagtcgcaacagccggcg
ccggctgcagccgccgaaccggcgccgcaagccgcaccggccgaagcaacgccggcggtc
caggctgcccccgagcaagccgttgccgccgaggtggacacgacgcctgccgcccaagcc
gtcgcgtcggatgtggcgcctgccgagccggtcgaaccggtccaggttgtcgccgctccg
gcagcaagccccgaacaggcagcgccgccggccgccgcaacggttgacgccagcgtaacg
gttggcgccgccgaaacggtcacgcagacggaaagcgaagcaaccgcgcctgccgccacc
cgggagccggccgctgccgagccggcgcccgcagccgctgcgcccgccacgcgcagcgcg
gccccgatcgtggtcggcgagcaaggcctgcagtcggtcgtgcaagcagcaggcctgacc
tgggtgcagaccgacccctcgcgccatgccgagtcgcaagcccgcagcgccaccgaggaa
aagccggtacgcctgggccgtgagcgcaagcccacggcgcaagtttccagccagcccctg
gtgcaggtcgagacccgcgactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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