KEGG   Burkholderia ubonensis: BW23_2238
Entry
BW23_2238         CDS       T03794                                 
Name
(GenBank) hypothetical protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bub  Burkholderia ubonensis
Pathway
bub03420  Nucleotide excision repair
bub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BW23_2238
   03430 Mismatch repair
    BW23_2238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bub03400]
    BW23_2238
Enzymes [BR:bub01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BW23_2238
DNA repair and recombination proteins [BR:bub03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BW23_2238
   MMR (mismatch excision repair)
    Other MMR factors
     BW23_2238
SSDB
Motif
Pfam: UvrD-helicase UvrD_C PDDEXK_1 AAA_19 UvrD_C_2 Cas_Cas4 AAA_30
Other DBs
NCBI-ProteinID: AJX15599
Position
I:complement(2407973..2410876)
AA seq 967 aa
MKRISTVDELRAEGLTAEQAAAAADTSATVLCIACAGSGKSQTLAYRIARLISEGTPATS
IVAITFTEKAADSIKRRVAKVLVRCGLSANLIGQMYIGTIHAFCQNVLGDSDAIFRQYDV
LDDNRFTLYLMSRYPELGINTLKPRFKDRYFETLSQVQHAWNVFRDEGLSIDEIDTHDPE
VGLVLKEIGQRLIRDQFLDFSSMVRETAERAKRNINVRARLGRIRHLLVDEYQDVSGSQE
ELIATIHELGANLFVVGDDDQSIYGFRGAHVSNILNFVTRYKGVSEHVLATNFRSTRAIV
AATNAFVASQLGPQRLYKQPREHVDLAPRHLAVHHFATRPEEAEWVAQRIQHLLGTEYVQ
SDGTVRGLTPGDFAILMRSTKTPEQDDNPRHHAFTRELDALNIRYTLNAGGSVFDRPCVA
ALRETFIALENGPISRPDATRLIDDHIRPAYPRVNPTKTYAVLADWGRRIHAPLGAARQR
LFPQQLLNDLLDAFDVAHSSLPDEVMREIGLFSRMLQDVESVYLSIDSSGRFTSVVRFLQ
QVAEEGYNVSTEDVVSRPDAVTVSTVHQVKGLEFPVVFVVDVVPGRFPGKRSNYSGLLPA
DLLASAIARGAYSNTREAEARLFYTALTRAERYLYVTGAASLPNGKRTNRQSEFAAALQD
VELIVDPLQTPPELSRAAPRQREDESTLPTSFSDIKYYLHCPMDYRFRKGFGFSPPVPEL
FGYGRVVHVAIEKLHEHFSGAAPTPAEASQIAADHFHLKHVARSRDPENRPGAYEQAMNK
AQEIAADYVTRFASDFAQQKQVEVRFEIPAQGCLITGSIDLLMRYNTKGDIVEAHVVDFK
TMQGGDDPSRNMQLDWRELSLQVQLYAKAAREVFNENAATGSIHLLKDNKRVDVPIDDAA
IQAAVANIEWAVRGILAKDYPSRPSKEKCENCDFNRLCPKTPQQFRADAGVPPPIMTPLG
PMSASAL
NT seq 2904 nt   +upstreamnt  +downstreamnt
atgaaaagaatttcaaccgtggacgagcttcgcgccgagggactgactgctgaacaggca
gcagccgcagctgatacatcggcgaccgttctgtgcatagcctgtgcgggttccggtaag
tcgcaaaccctcgcctatcggattgcacgtctgatatccgaagggacgccggccacttcg
atcgtggccataaccttcaccgaaaaagccgccgactccatcaagcgtcgcgtagccaaa
gttctggtcaggtgcggtctcagcgcgaacctgatcggtcagatgtacatcggcactatt
cacgcgttctgtcagaatgtgctaggtgactcggacgccattttccgtcagtacgatgta
ctcgacgacaaccgcttcacactctatttgatgtcccggtatccggaactgggaatcaat
acactgaaaccgcgatttaaggaccgatactttgagactctctcacaggtccagcacgcg
tggaacgtattccgggatgagggactatcgatagatgaaatcgatacgcacgatccggag
gttggccttgtactaaaggagatcgggcaacgcttaatacgcgatcaattccttgacttc
tcgtcgatggtacgcgagacggccgaacgggcgaaaagaaatatcaacgttcgagcacgc
cttggtcgtattcggcatttactagttgacgaatatcaggacgtgtctggctctcaggag
gagctaattgcgacgattcacgaattaggggccaacctcttcgtggtaggcgatgacgac
cagtcgatttacggattccgcggcgctcacgtttcgaacatccttaattttgttactagg
tacaaaggcgtcagcgaacacgtcctcgccacaaactttcgaagcacccgcgctattgtg
gccgcgaccaacgcgttcgtcgcgtcccagttgggtcctcagcggctctataagcaaccg
cgtgaacacgtcgatctcgctccacgacatcttgccgtgcatcattttgcgacccgccca
gaagaagccgaatgggtggcgcaacgcatccaacatctgctgggaacagaatatgtccaa
tcggatgggacggtccgaggtctcacaccgggtgacttcgccatcctcatgcgttcaaca
aagacgcctgagcaggatgacaatccacgacatcacgcgttcacacgtgaactagacgca
cttaacatacgttatacgttaaacgctggcggttcggtttttgataggccgtgcgtagct
gcacttcgagaaacatttatcgcgctcgagaacgggccgatctcccgacccgacgctact
cgcctgatcgatgatcacatcaggccggcataccctcgtgttaaccccacaaaaacatac
gccgtgctcgcggattgggggcggcgaatacatgcgccgctcggcgcagcccggcagcga
ctgtttccgcaacagctactgaatgaccttctggacgcattcgacgtagcacatagctcg
ctcccagacgaagtaatgcgcgagatcggccttttcagccggatgctgcaagacgtcgaa
agtgtatatctaagcatcgactcgagcggtcgattcacatctgtcgtgcggttcctgcag
caagtcgccgaggaaggctataacgtcagtacagaggatgtagtatcacgccccgacgca
gttaccgtctctacggtgcatcaggtgaaggggctagaattcccggtcgtgtttgtcgtc
gatgtcgtcccagggcggtttccgggcaagcgttcaaattacagcggactgctaccggca
gatcttctcgcgagcgccatcgcacgcggcgcgtactccaacacacgcgaagccgaagca
cgactgttctacacggccctcacgcgcgcggaacgctacctgtacgttactggcgccgca
tcgcttccgaacggaaagcgcactaaccgccagtcggagtttgccgcagcgctgcaagat
gtcgagctgatcgttgatccgctgcaaacgcctcctgaattaagtcgggccgcgccgcgg
cagagagaagatgagtcgacgttgcccacgtcgtttagcgacatcaaatactacctgcat
tgccccatggattatcggttccgcaagggtttcggatttagcccacctgtcccggaactg
ttcgggtacggccgcgtggttcacgtcgccatcgagaaactgcacgagcatttctcgggg
gccgctcccacgccagcggaagcgagccagatcgccgccgaccattttcacctgaagcat
gttgcgcggagtcgcgatccggaaaaccgtcctggcgcttacgagcaagcgatgaataag
gcacaggaaatcgcagcggactatgttacgagatttgcctcggacttcgctcaacaaaaa
caggttgaagtgcgtttcgagattccagcacagggatgcctcatcacaggctccattgat
ctgctcatgcgttacaacacgaaaggcgatatcgttgaagcccacgttgtagattttaaa
acgatgcaaggcggagacgacccatccaggaacatgcagctagactggcgtgaactttcg
ctgcaggtacagttatacgctaaggcggcgcgcgaagtgttcaatgaaaatgcggctacg
ggatcgatccatctgctgaaggacaacaaacgagttgacgtgccgatcgatgatgcggcg
atacaagccgcagttgcgaacatcgagtgggctgtgcggggcatcttggcaaaggactat
ccaagcaggccgagcaaagaaaaatgcgaaaactgcgacttcaaccgactatgcccgaaa
acgcctcagcaatttcgcgccgatgcaggcgtcccgccacccatcatgacgccgctcggc
cccatgagtgcgtcggcactgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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