KEGG   Burkholderia sp. PAMC 26561: AXG89_14635
Entry
AXG89_14635       CDS       T05481                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bum  Burkholderia sp. PAMC 26561
Pathway
bum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AXG89_14635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bum03019]
    AXG89_14635
   03016 Transfer RNA biogenesis [BR:bum03016]
    AXG89_14635
Enzymes [BR:bum01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AXG89_14635
Messenger RNA biogenesis [BR:bum03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AXG89_14635
Transfer RNA biogenesis [BR:bum03016]
 Prokaryotic type
  tRNA degradation factors
   AXG89_14635
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 RcsD_ABL HTH_12 CSD
Other DBs
NCBI-ProteinID: AME24904
UniProt: A0A109WP27
Position
1:complement(3219312..3221819)
AA seq 835 aa
MNKYPYPIPSREEILGVLRTSEAPLAANDIAEALSIKRQEREGFFKRLGAMERDGQVRLD
KRGYYQLTHPSNFVAGRVQGHRDGFGFLIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHIVEVTDRANKRIIGRLISENGALILVPEDKRIGHDILITQNPKKAKVGQVV
SVDLTDFPSRHSQPLGRVVEVIGDIDDPGMEIEIAVRKYGVPHEFSDRALEQASKLPDEV
RPADIRHRVDLRDVPLVTIDGEDARDFDDAVYCEPMNVGRGTGFRLLVAIADVSHYVRPN
EALDVDALDRSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMVITARGEIKAYQ
FYPAVMHSAARLTYTEVASVLTNTKGPEAAKRADLLPQLQNLYGVYKSLHAARQKRGAID
FDTTETYIVCNAQGKIEQIVPRHRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGVGLALGGGEKPHASDYAALMAMVRDRPDAQMLQSMVLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILQGKKYQPEVGHDVTLSTGLTKA
ARAMQKSDDESRSRQRNNVAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTTFGIFVQLDSLFIEGLVHITELGADYFQYDEIKNELRGERTGIRYRMSDRVR
VQVSRVDLDSRKIDFRLVRDTPVKPPGRSSAPAAAVEHAGVNGAGPRVRSLPADEGSSVN
GRRRDRGGKKAAAQAAGKAAAAALPPTIAKDLAVAKKRGAVTKPAAKSHPPRKKR
NT seq 2508 nt   +upstreamnt  +downstreamnt
ttgaacaaatatccgtatccgattccgagccgcgaagaaattctcggcgtgttgcgcacg
agcgaagccccgcttgctgcgaacgacatcgctgaagctctgtcgatcaagcgccaggag
cgcgaaggatttttcaagcgattgggagccatggagcgcgacggccaggtccgtctcgac
aaacgcggctactaccagctcacgcatccctcgaatttcgtggcgggccgggtccagggc
catcgcgacggtttcggtttcctgattcgcgacgacggccaggacgacctgtttttgccc
aacggcgaaatgcagaaagtcatgcacaacgaccgcgtgctcgcgcggatcgtcggctat
gaccgccgcggacgtccggaaggccatattgtcgaagtcacggatcgcgcgaataaacgc
attatcggcaggctgatcagcgaaaacggcgcgctgattctcgttcccgaagacaagcgt
atcggtcacgacatcctgatcacgcagaacccgaagaaggcgaaagtggggcaggtggta
tcggtggatctcaccgattttccgagccgtcactcgcagccgctcgggcgtgtggtcgaa
gtgatcggcgatatcgacgacccgggcatggaaatcgagatcgcggtgcgcaaatacggc
gtgccgcacgagttcagcgatcgcgcgctcgagcaagcctcgaagctgcccgacgaagtg
cgtccggctgacatccggcatcgcgtggatttgcgcgatgtgccgctcgtgaccatcgac
ggtgaagacgcacgcgacttcgacgacgccgtgtattgcgaacccatgaatgtcggtcgg
ggtacgggctttcgcttgctggtcgcgattgccgacgtctcgcattacgtgcgcccgaat
gaagcgctggacgtggacgcgctcgatcgcagcacgtcggtgtatttcccgcgccgcgtg
attccaatgttgccggagaagctgtcgaacggcttgtgttcgctgaatccgcaggttgat
cgttgcgtgctggtctgcgacatggtgatcaccgcgcgtggcgagatcaaggcgtaccag
ttctacccggctgtgatgcattcggcggcgcggttgacgtacacggaagttgcatctgtc
ctgaccaatacgaagggacccgaagctgcgaagcgcgctgatcttctgccgcaactgcag
aatctctatggcgtgtacaagtcgctgcacgcggcgcgtcagaagcgcggcgcgatcgac
ttcgataccaccgagacctacatcgtatgtaacgcgcagggcaagatcgagcagatcgtg
ccgcgtcaccggaacgacgcgcacaggctgatcgaggagtgcatgctggccgcgaacgtc
tgcgccgcggacttcctgaagcgcaacaagcacccggggttgtatcgcgtgcatgccggg
cctacgccggaaaagctcgagaatctgcgtgcgttcctgcgtggcgtggggctggcgttg
ggcggtggcgagaagccgcacgcaagcgattacgccgcgctcatggcgatggttcgtgac
cggccggatgcgcaaatgctgcaaagcatggtgctgcgttccatgcagcaagccgtgtac
agccctgacaacatcggccactttggactcgcgtacgaagcgtatgctcacttcacgagc
ccgattcgccgatatccggatttgctcacgcatcgcgcgatctacgccatcctgcaaggc
aagaagtaccagcctgaagtcggtcacgacgtcacgctcagcaccggcttgacgaaagcc
gcacgcgccatgcagaagtccgacgacgagtcgcgcagccgtcagcgcaacaacgtcgcg
atctgggaagaactcggactgcattgttcgtcgaatgaacggcgtgccgacgaggcctcg
cgcgacgtggaagcctggctcaagtgctatttcatgcgcgacaagctcggcgaagagtac
ggcggcatggtcaacggcgtgacgacgttcggcattttcgtgcaactggattcgttgttc
atcgaagggctggtgcatatcaccgagctcggtgcggactacttccagtacgacgagatc
aagaacgagttgcgcggcgaacgcacgggcatccgctaccgcatgtcggatcgtgtgcgc
gtgcaggtgagccgcgtggatctggattcgcgcaagatcgacttccgtctcgtccgcgat
acacccgtcaagccgcccggccgttcatcggcaccggctgcggcggttgagcacgcgggc
gtcaacggtgccggtccgcgtgtccgttcgttgccggccgacgaaggcagcagcgtgaac
gggcgccggcgtgatcgcggcggcaagaaggccgcggcgcaagcggcaggcaaggcggca
gccgccgcgttgccgccgaccatcgcgaaagatctggcggtggcgaaaaagcgcggcgct
gtcactaagccggcggcgaaaagtcacccgccgcgcaagaagcgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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