KEGG T05785: D8S85

Butyricimonas faecalis: D8S85_00675

Entry

D8S85_00675       CDS       T05785

Symbol

rlmD

Name

(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

buy Butyricimonas faecalis

Brite

KEGG Orthology (KO) [BR:buy00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:buy03009]
    D8S85_00675 (rlmD)
Enzymes [BR:buy01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     D8S85_00675 (rlmD)
Ribosome biogenesis [BR:buy03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    D8S85_00675 (rlmD)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr Methyltransf_31 TRAM Met_10 MTS Methyltransf_25 Methyltransf_15 N6_N4_Mtase Cons_hypoth95 PCMT PrmA Methyltransf_11

Other DBs

NCBI-ProteinID:

AZS28209

UniProt:

A0A3Q9IRA5

Position

complement(162331..163734)

AA seq 467 aa
MARGKKPLLENIEIKKIAAEGKSIAYVDEKVLFVPNTVPGDIVDVQVTRKRKSFLEGFIV
NVRKFSDIRTEPFCAHFGVCGGCKWQNLPYQLQTEFKQQEIVDNLQRIGKVELQNVSPII
SSPKTTYYRNKLEYTFCNKRFLTREEIANGQDIDRTPAVGFHVPGLFDKVIDIKKCYLQA
EPSNAVRNFIRDYAIEHEFNFYDIREQAGFLRTLIIRTSSTGEVMVIVTFGEENREAREG
LLNALVQQFPEITSLMYVINEKMNDTITDQEVICFHGNDHIFEQMEDLKFKIGPKSFYQT
NSEQAYNLYARTRELAGLTGNEVVYDLYTGTGTIANFVARNAQKVIGIEYVPEAIEDAKI
NSALNNIHNTLFYAGDMKDVLNEEFIRRHGHPNVIITDPPRSGMHKDVVDTILKAAPERI
VYVSCNSATQARDLALMDADYKVMAVQAVDMFPHTHHVENIVLLHRR

NT seq 1404 nt +upstreamnt +downstreamnt
atggcccgcggtaaaaagcccctactggaaaatatagaaatcaaaaaaatcgccgcagaa
ggcaaatccatcgcttacgtggatgaaaaagtattattcgtgccgaacaccgtacccggt
gacatcgtcgacgtacaagtcacccggaaacgtaaaagttttctggaaggctttatcgtt
aacgtgcgaaaattctctgatatccgcacggaacctttttgcgcgcatttcggagtatgt
ggcggatgtaaatggcaaaacctcccctatcagttgcagactgaatttaaacaacaggaa
atcgttgacaacctgcaacgaatcggtaaggttgaattgcaaaatgtatccccgattatc
agctcacccaagactacctactaccggaataagctggaatataccttttgcaataaacgc
tttctgacacgggaagaaatcgccaacggtcaagacatcgaccggactccggccgtaggt
tttcacgtccccggactattcgataaggtgatcgacataaagaaatgctatctgcaagcc
gaaccgtcgaatgccgtgcgtaattttatccgggactatgccatcgagcatgaattcaat
ttttatgacatccgtgaacaagccggatttttacgcaccttgatcatccgtacctcttcc
acgggagaagtcatggtcatcgttacgtttggtgaagagaatagagaggctcgggaaggt
ttattgaatgccctcgtgcaacaattccccgaaatcacctctctcatgtacgtcatcaat
gaaaagatgaacgatacgatcaccgatcaggaagtgatctgtttccatgggaacgaccac
attttcgaacaaatggaagatctaaaattcaagatcggcccgaaatccttctaccagacc
aactccgaacaagcttacaacttgtacgcgagaacaagagagttggcaggattaaccgga
aacgaggtagtatatgacctttacaccgggaccggaaccatagccaacttcgtggcccgt
aacgcacaaaaggtcatcgggatcgaatacgttccggaagccattgaagatgccaaaatc
aattcggctctcaacaatatccacaacacgctattctatgctggagatatgaaagacgtg
ctaaacgaagagttcatccgtcgccacggtcaccccaacgtgatcatcaccgatcctccc
cggtccggtatgcataaagatgtcgtggataccattctaaaagcagctcctgaacgcatt
gtttacgtgagttgcaattctgctacccaagctagggatttagcccttatggatgcagat
tacaaggttatggccgtacaagccgtagatatgttcccgcacacgcatcacgtggagaat
attgtattgctacatcgcagataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (20)   

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