KEGG   Burkholderia vietnamiensis LMG 10929: AK36_2088
Entry
AK36_2088         CDS       T03893                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bve  Burkholderia vietnamiensis LMG 10929
Pathway
bve03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bve00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AK36_2088 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bve03021]
    AK36_2088 (rho)
   03019 Messenger RNA biogenesis [BR:bve03019]
    AK36_2088 (rho)
Transcription machinery [BR:bve03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AK36_2088 (rho)
Messenger RNA biogenesis [BR:bve03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AK36_2088 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB ATPase_2 AAA_22 AAA_25
Other DBs
NCBI-ProteinID: AJY05262
Position
I:complement(2256665..2257927)
AA seq 420 aa
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcatttatccgagctcaagtctctgcacgtgtccgaactgatcgaaatggccaatggc
ctggagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgttcgccattctcaaa
aagcgcgccaagacgggagagacgatcttcggcgacggtacgctcgaagtgctgcccgac
ggcttcggcttcctgcgttcgccggaaatgtcgtacctcgcgagcaccgacgacatctat
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtcgctcgagcgtgaaatgcgcggcgaagagaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctggtcgcatcgccg
aagtcgggcaagaccgtgatgctccagcacatcgcacacgcgatcaagcagaaccacccc
gacgtcatcctgttcgtgctgctgatcgacgaacgcccggaagaagtgaccgaaatgcag
cgctcggtcgccggcgaagtgatcgcatcgacgttcgacgaaccggccacgcgtcacgtt
caggttgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgacgtc
gtgattctgctcgactcgatcacgcgtctcgcgcgcgcatacaacaccgtgatcccggca
tcgggcaaggtgctcaccggcggtgtcgacgcgaacgcgctgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctgaccatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaac
atggaagtgcacctcgagcgccgtctcgccgaaaagcgcgtctatccgtcgatcaacctg
aacaagtcgggtacgcgccgcgaagaaatgctgatcaagccggaaatcctgcaaaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaggcaatggaattcctgctc
gacaagatccgccagacgaagagcaattccgagttcttcgatctgatgcgccgcggcggc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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