KEGG   Beta vulgaris (sugar beet): 104900705
Entry
104900705         CDS       T03548                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg03020  RNA polymerase
bvg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104900705
  09124 Replication and repair
   03420 Nucleotide excision repair
    104900705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bvg03021]
    104900705
   03400 DNA repair and recombination proteins [BR:bvg03400]
    104900705
Enzymes [BR:bvg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104900705
Transcription machinery [BR:bvg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104900705
DNA repair and recombination proteins [BR:bvg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104900705
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 104900705
NCBI-ProteinID: XP_010686499
Position
8:3059811..3066785
AA seq 1200 aa
MNGGEYDYENENENMMMIDEEEEEEEDITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQN
TMQEIVDESADIEIRPESQHNPGHQSDFAETIYKIKFGQIYLSKPMMTESDGETATLFPK
AARLRNLTYSAPLYVDVIKRVIRKGHDGDETTEAHELPKVFIGKVPIMLRSSYCTLYQNS
EKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAE
SQNRPPSTMFVRMLSRAGAKGGSSGQYIRCTLPYIKSDIPIIIVFRALGFVADKDILEHI
CYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAREILQKEML
PHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLF
RKLTRDVRAYVQKCVDQGKDLNLSFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM
VYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRDPELLVKTLRQ
LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPE
DGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
HLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSAIDRGFFRSLFFRSYRDEEKKMGTLV
KEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLAQEEAQGPSSRY
SRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM
TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDVTV
DNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIA
NLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMFTKDVNKISKDQKKKGA
NT seq 3603 nt   +upstreamnt  +downstreamnt
atgaatggaggagagtacgattacgagaatgagaacgaaaatatgatgatgattgatgaa
gaagaagaggaagaagaagatattactcaagaagatgcttgggcggtaattagtgcttat
tttgaagagaaaggtttagtcaggcaacaacttgattcattcgatgagtttattcagaat
acgatgcaagaaattgttgatgaatccgcggatatcgagattcgccctgagtcacagcat
aatcctggacaccagtctgattttgctgagacgatatataagataaagtttggccaaatc
tatttgagtaagccgatgatgactgaatcagatggtgagactgctacgttgtttccaaaa
gcagccagactgaggaacctgacgtactcagctcctttgtatgttgatgtcattaaaaga
gtaattaggaaaggacatgatggtgacgaaaccacggaagcacatgagctcccgaaggtt
tttattggaaaggtcccaatcatgcttcgctcaagttactgtacattgtatcagaattca
gagaaggatcttacggagcttggtgagtgcccctatgatcaaggtggatatttcatcatt
aacggaagtgagaaggtgcttatcgctcaggaaaaaatgagcacaaatcatgtctatgtg
tttaagaagaggcagccgaacaagtttgcttatgtagcagaagttcgatctatggcagaa
tcccaaaataggcctccgagtaccatgtttgtgcgaatgctctctcgagctggagctaaa
gggggttcttccgggcaatatattcgttgtactttgccttacatcaaatcagatattccg
ataataatagtatttcgagcattgggctttgttgcagataaagatatattggagcatatt
tgctatgacttttctgatactcagatgatggaattgcttcgtccttcattagaagaggca
tttgttattcagaatcagcaagttgcactagattacattggaaaaagaggagcaaccgtt
ggtgttaccagggagaagaggatcaagtatgccagggagattctccaaaaggaaatgctt
ccacatgttggtgttggtgaatattgtgagaccaagaaagcttactattttggatatata
atccaccggcttctgttatgtgcaatcggtagaaggcctgaggacgatagagatcattat
ggtaataaaagactagatcttgctggtccgttgctgggaggtctctttcggatgttgttt
cgaaagttaaccagggatgtgagagcgtatgttcagaagtgtgttgatcaagggaaggat
ctgaatcttagctttgctatcaaagctaagacaataactagtgggctcaagtactctctg
gccactgggaattgggggcaggctaacgcggctggtactagagctggagtttcacaggtg
ctgaatcgtcttacatatgcctccaccttgtcacacttgcgtaggttaaactctccgatt
ggacgtgaagggaagttggctaaacctaggcagctgcataattcacagtggggaatgatg
tgtcctgctgaaacacctgaaggacaagcttgtggactagtgaaaaatcttgcactaatg
gtgtatatcactgttggttctgcagcgtatcccatactggagtttttggaagaatggagt
acagagaattttgaggaaatatcaccagctgtgataccccaagctaccaagatctttgta
aatggttgctgggttggtattcatcgggatcccgagttacttgtcaagacattaaggcaa
ttaagaagaagggttgatgtcaatactgaagttggggttgttcgtgatattcggttaaaa
gaattgcgcatatataccgactatggtcgttgcagtcgtccgctatttattgttgagaag
cagaggctgcttattaaaaagaaggatatccgggcattacaacagagggagtcacctgag
gatggtggctggcatgatcttgtcgcaaagggatttatcgagtacattgacacagaagaa
gaagagacgactatgatttctatgacaatcaatgatcttgtgtcagcacggctcaatccg
gaggaggcatactccgagacctacactcactgtgaaattcacccgtccttgatattgggt
gtctgtgcgtcaattattccatttcctgatcacaaccagtccccccgtaatacgtatcaa
tcagctatgggaaagcaagctatgggaatctatgtcacaaattatcagttcagaatggat
acgctggcatacgttctctactatccccaaaagcctcttgttacaacgcgtgccatggag
catctgcatttcagacagcttcctgctggaattaatgctattgttgccatttcttgctat
tctggctataaccaagaagattctgttattatgaatcaatctgcaatcgaccgtggattc
ttccgatctctatttttccgttcgtacagagatgaggagaagaagatgggaacacttgtc
aaggaggactttgggcgtccagacagatcaaatactatgggtatgcgacatggatcttat
gacaaattagatgatgacgggcttgcacctcctggtacaagagtttcaggcgaggatgtt
ataattgggaagactactccccttgcccaagaggaagctcaagggccatcttcacgctat
tcacggcgtgatcatagtattagcttacgtcacagtgaaacaggaatggtggatcaggtt
ttattgacaaccaacgccgatggcttgagatttgtgaaagtgagggtcagatctgtgcgt
atacctcagattggggataagtttagcagtaggcacggtcagaagggaacagttggcatg
acttacactcaggaggatatgccatggactgtagaaggcatcactcctgatattattgta
aaccctcatgctatcccatcacgtatgacaattggccagcttattgagtgtatcatgggt
aaggttgcagctcatgttggaaaggaaggagatgctacaccattcactgatgtcactgtg
gacaatatcagtaaggccctccacaaatgtgggtatcagatgcgtggttttgaaaccatg
tataatggtcacacaggacgaaagctcactgcaatgattttcttgggaccaacttattac
caaagacttaagcatatggttgatgacaagatccactctcgtggacgaggccccgtacag
attctcacccggcagcctgctgagggacgatctcgtgatggtggtcttcgtttcggagag
atggagagagactgcatgattgcccatggtgctgctcacttccttaaagaaaggcttttt
gaccaaagtgatgcatacagagttcatgtatgtgaacgctgtgggctgatcgccattgca
aatctcaagaagaattcttttgaatgtagaggttgcaagaacaagactgacattgttcag
gttcacattccttacgcttgtaagctgctcttccaagagcttatgtccatggccatagca
ccgagaatgttcacaaaagatgttaataagatatctaaagatcagaaaaagaagggagca
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (79)   

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