KEGG   Beta vulgaris (sugar beet): 104902723
Entry
104902723         CDS       T03548                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg04120  Ubiquitin mediated proteolysis
bvg04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104902723
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    104902723
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bvg04121]
    104902723
Enzymes [BR:bvg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104902723
Ubiquitin system [BR:bvg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104902723
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     104902723
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 WD40_like zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_4 YbfN U-box Prok-RING_4 DUF1664 zf-Nse Rad50_zn_hook
Other DBs
NCBI-GeneID: 104902723
NCBI-ProteinID: XP_010688913
Position
9:complement(3278067..3288196)
AA seq 668 aa
MKERENSSGALVPAVKPLSVLAPESAIASDEIEVSPTETDKDLMCPICMQMIKDAFLTAC
GHSFCYMCIITHLRNKSDCPCCGRHLTNNQLYPNFLLDKLLKKASVRQVSRNASPVEQFR
RALLQGCEVSVKEVDTLMSLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELSEIQG
DLQYIKEDITAVERHRMELYRARDRYSVKLRMLSDDPSPKLWPSTADRSGGGVSSGSRSS
LGGLAAGSFQNKKMDGKAQGSQGPLRKDALGGLDSQYISQSGLAVMRKKRIHVQFNDLQE
CYLQKRRQLGGQPVRQDERDPTFMQREGYTAGLAEFQSVLSTFTRYSRLRVIAELKHGDP
FHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADAHCPVVEISTLSKLSCLS
WNKFTKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSCTEPSMLVSGSDDCK
VKVWCTKQEASVLNIDMKANICCVKYNPGSSYHIAVGSADHHIHYYDLRNISQPVHVFGG
HKKAVSYVKFLSTYELASASTDSTLRLWDVKESLPVRTFRGHTNEKNFVGLSVNSEYIAC
GSETNEVFVYHKEISRPVTCHKFGSPDVEDADEDAGAYFISAVCWKSDSPTLLTANSQGT
IKVLVLAA
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaaggagagagaaaattcttccggcgctttagttccggcggtgaagcctttatcggta
ttggcgccggaatccgccattgccagcgatgaaatcgaggtttctccgacggaaactgat
aaagatttaatgtgtccgatttgtatgcagatgattaaagacgcgtttcttacagcttgt
ggacatagtttttgttacatgtgtattattacgcatcttcggaataagagtgattgtcct
tgttgtggtcgtcatcttactaataatcaactttaccctaattttcttcttgataagcta
ttgaagaaggcttcggttcgtcaagtttcgagaaatgcatctcctgttgagcaatttcgt
cgtgcattgttgcagggttgtgaagtatcagtcaaggaggtggacaccctcatgtctctt
cttgcagagaaaaagagaaagatggagcaagaagaagcagagaggaatatgcagattttg
ctagatttcctgcattgcttgaggaagcagaaagttgatgaacttagtgagattcaaggt
gatctgcagtacattaaagaggacatcactgctgtggagagacataggatggaattatat
cgagcaagggataggtactcagtgaaactgagaatgctcagtgatgatccttccccaaaa
ttatggccttcaacagctgataggagtggtggcggtgtatcttctggttctcgtagctca
ctaggagggttggctgcaggaagtttccagaacaagaagatggatggaaaggctcaaggc
tcccaagggcctttaagaaaggacgctttaggtggtttagactcacaatacattagccag
tcaggtttggctgtgatgagaaaaaaaagaatccatgtgcagttcaatgacttgcaagaa
tgttacttgcaaaagcgtcgccaattgggtggccagccagtcagacaagatgaaagggat
ccaacgtttatgcagagagaaggctatactgcaggtcttgctgagtttcaatctgtactg
tccacattcactcgttacagtcgcttaagagttatagcagaactcaaacacggggaccct
tttcattcagcgaatatcgtatcaagcatagaatttgaccgtgatgatgagttatttgct
acagctggtgtttctcgaagaattaaagttttcgacttctcctcggttgtgaatgaacct
gcagatgcacactgtcctgttgttgagatatcaactttgtccaaactcagttgtttgagc
tggaacaagtttactaagaatcaaatagctagtagtgattatgagggaatagttactgta
tgggatgtgacaacgcgccagagtgtgatggagtatgaagagcatgaaaaacgggcatgg
agtgtcgatttctcgtgcacagaaccttcaatgcttgtatctggcagtgatgactgtaag
gtaaaagtgtggtgtacaaagcaggaagctagtgtgcttaacattgacatgaaggcaaat
atatgttgtgtcaagtacaatccaggatctagctatcatattgcggttggttctgctgac
catcatattcattattatgatttgagaaatataagccagccagttcatgtctttggtggg
cataagaaagcagtttcatatgtcaaattcttatcaacttatgagcttgcttcagcatca
acagacagcacattgaggctgtgggatgtgaaagaaagcttaccagttcgtacatttagg
ggccatactaacgagaagaacttcgtaggactgtctgtaaacagtgaatacattgcctgc
ggtagtgaaactaacgaagtatttgtatatcacaaggaaatttctagaccggtaacatgt
cacaaatttggatcaccggatgttgaagacgcggatgaagatgctggggcctattttatc
agtgctgtatgctggaagagtgatagtcctacattgttaactgccaatagtcaaggaaca
ataaaggtgctagtgcttgctgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (50)   

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